Non-Coding RNA Search

mCP1-MI-P-CP1-nwv-c-05-0-UI.s1

Sequence:


               
               TGTCCACTAGCAACAGAACTTCTTCTCTGATTTCAGCATTTACATAGGAAGTTCCTATAA
AGCACTGCCTGCTGGCTGCCCTTCNCCAGATCCTGAATGCACTCCTGGCCAGGTGGAGCA
GAGAACCGTCACTCTACGGGTCATGCTGAGCTCGTACCCTGATGGCTGTTCCATGAGGTC
AAGACCGGGTCCCCTCCCTCCTCCCATTTTACCAATGCCTGGTCTCATGGGATTAGTGTG
GAGCCCAAAACGATGGCATCATCAACCTCCTTCCCGGATCCTCGCTCCAAAAAGCCTTTG
GGCAAGATGGCTGACTGGTTCAGACAGGCCCTGTCGAAGAAGCCCACAACGACTCATGTC
TCCCCAGAAAACCGCCCTAGTGATATTTCACAGTCGAGCTCACAGGACAGCCCTCCACCC
CTGAGCCCCAGCTCAGAGGTGTCTCCCACCCTGCCACCGACACACATGGGCGCGGACAGC
AGCAGCAGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCCACTAGCAACAGAACTTCTTCTCTGATTTCAGCATTTACATAGGAAGTTCCTATAA
AGCACTGCCTGCTGGCTGCCCTTCNCCAGATCCTGAATGCACTCCTGGCCAGGTGGAGCA
GAGAACCGTCACTCTACGGGTCATGCTGAGCTCGTACCCTGATGGCTGTTCCATGAGGTC
AAGACCGGGTCCCCTCCCTCCTCCCATTTTACCAATGCCTGGTCTCATGGGATTAGTGTG
GAGCCCAAAACGATGGCATCATCAACCTCCTTCCCGGATCCTCGCTCCAAAAAGCCTTTG
GGCAAGATGGCTGACTGGTTCAGACAGGCCCTGTCGAAGAAGCCCACAACGACTCATGTC
TCCCCAGAAAACCGCCCTAGTGATATTTCACAGTCGAGCTCACAGGACAGCCCTCCACCC
CTGAGCCCCAGCTCAGAGGTGTCTCCCACCCTGCCACCGACACACATGGGCGCGGACAGC
AGCAGCAGCGGCCGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               162-280, - strand, RNAz p=0.596733

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               162-280, - strand, RNAz p=0.596733

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               162-313, gnl|bosTau2|chr29 (25672994-25672837)
               

               
               162-313, gnl|canFam2|chr5 (11226864-11226394)
               

               
               162-313, gnl|dasNov1|scaffold_37298 (10717-11134)
               

               
               162-313, gnl|echTel1|scaffold_321716 (34427-34017)
               

               
               162-313, gnl|hg17|chr11 (125665800-125666268)
               

               
               162-313, gnl|Hg17|chr11 (125665909-125666066)
               

               
               162-313, gnl|mm7|chr9 (35086058-35085622)
               

               
               162-313, gnl|Mm7|chr9 (35085977-35085820)
               

               
               162-313, gnl|monDom2|scaffold_15 (13221434-13221879)
               

               
               162-313, gnl|oryCun1|scaffold_201011 (10290-10758)
               

               
               162-313, gnl|panTro1|chr9 (127748895-127749363)
               

               
               162-313, gnl|rheMac2|chr14 (124437257-124437724)
               

               
               162-313, gnl|rn3|chr8 (34978630-34978210)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               162-313, gnl|bosTau2|chr29 (25672994-25672837)
               

               
               162-313, gnl|canFam2|chr5 (11226864-11226394)
               

               
               162-313, gnl|dasNov1|scaffold_37298 (10717-11134)
               

               
               162-313, gnl|echTel1|scaffold_321716 (34427-34017)
               

               
               162-313, gnl|hg17|chr11 (125665800-125666268)
               

               
               162-313, gnl|Hg17|chr11 (125665909-125666066)
               

               
               162-313, gnl|mm7|chr9 (35086058-35085622)
               

               
               162-313, gnl|Mm7|chr9 (35085977-35085820)
               

               
               162-313, gnl|monDom2|scaffold_15 (13221434-13221879)
               

               
               162-313, gnl|oryCun1|scaffold_201011 (10290-10758)
               

               
               162-313, gnl|panTro1|chr9 (127748895-127749363)
               

               
               162-313, gnl|rheMac2|chr14 (124437257-124437724)
               

               
               162-313, gnl|rn3|chr8 (34978630-34978210)

	162-313, gnl\|bosTau2\|chr29 (25672994-25672837)
	162-313, gnl\|canFam2\|chr5 (11226864-11226394)
	162-313, gnl\|dasNov1\|scaffold_37298 (10717-11134)
	162-313, gnl\|echTel1\|scaffold_321716 (34427-34017)
	162-313, gnl\|hg17\|chr11 (125665800-125666268)
	162-313, gnl\|Hg17\|chr11 (125665909-125666066)
	162-313, gnl\|mm7\|chr9 (35086058-35085622)
	162-313, gnl\|Mm7\|chr9 (35085977-35085820)
	162-313, gnl\|monDom2\|scaffold_15 (13221434-13221879)
	162-313, gnl\|oryCun1\|scaffold_201011 (10290-10758)
	162-313, gnl\|panTro1\|chr9 (127748895-127749363)
	162-313, gnl\|rheMac2\|chr14 (124437257-124437724)
	162-313, gnl\|rn3\|chr8 (34978630-34978210)