Non-Coding RNA Search

mCP1-MI-P-CP1-nwz-e-06-0-UI.s1

Sequence:


               
               GGCACGAGGGCGCCCCAGCCTGGCGGAGGGACAGCCAGGCTGCCCCGCCCTGGCCCGGTG
ATTGATCAGCAGCGGTTACTGAGTCTCTTAATGGTTCGCTTGGATGGGAATTAATTCTGA
GATGGATAAATAATGCATTGAGGTTTATGTAGTCCAAGGCAAGCCGTCGGTCTGGAGCCA
GGAGAGGCAGCCGAAGGAGCCTCGCGGGTGACGCCCACGGCCATGGGGGCCCACGGAGCG
GAGCATGAGGGGCAACTGGGCGAAAGGAAGGGAAAAGGGAAGTGGATGACAGCATGATCT
GCCCAGCGACTGCGGTGGGGCAGTGTCAGGAATATGCTGAGCCCAAAGATCAGGCAAGCC
CGGAGGGCTCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCACGAGGGCGCCCCAGCCTGGCGGAGGGACAGCCAGGCTGCCCCGCCCTGGCCCGGTG
ATTGATCAGCAGCGGTTACTGAGTCTCTTAATGGTTCGCTTGGATGGGAATTAATTCTGA
GATGGATAAATAATGCATTGAGGTTTATGTAGTCCAAGGCAAGCCGTCGGTCTGGAGCCA
GGAGAGGCAGCCGAAGGAGCCTCGCGGGTGACGCCCACGGCCATGGGGGCCCACGGAGCG
GAGCATGAGGGGCAACTGGGCGAAAGGAAGGGAAAAGGGAAGTGGATGACAGCATGATCT
GCCCAGCGACTGCGGTGGGGCAGTGTCAGGAATATGCTGAGCCCAAAGATCAGGCAAGCC
CGGAGGGCTCGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               249-367, + strand, RNAz p=0.830038

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               249-367, + strand, RNAz p=0.830038

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               5-367, gnl|bosTau2|chr28 (29466511-29466870)
               

               
               5-367, gnl|canFam2|chr28 (3553176-3554105)
               

               
               5-367, gnl|hg17|chr10 (49482339-49483259)
               

               
               5-367, gnl|Hg17|chr10 (49483168-49482814)
               

               
               5-367, gnl|loxAfr1|scaffold_26046 (1611-2552)
               

               
               5-367, gnl|mm7|chr14 (30682070-30681165)
               

               
               5-367, gnl|Mm7|chr14 (30681264-30681596)
               

               
               5-367, gnl|oryCun1|scaffold_213225 (82479-81661)
               

               
               5-367, gnl|panTro1|chr8 (49810109-49811029)
               

               
               5-367, gnl|rheMac2|chr9 (48013203-48012285)
               

               
               5-367, gnl|rn3|chr16 (8787741-8786889)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-367, gnl|bosTau2|chr28 (29466511-29466870)
               

               
               5-367, gnl|canFam2|chr28 (3553176-3554105)
               

               
               5-367, gnl|hg17|chr10 (49482339-49483259)
               

               
               5-367, gnl|Hg17|chr10 (49483168-49482814)
               

               
               5-367, gnl|loxAfr1|scaffold_26046 (1611-2552)
               

               
               5-367, gnl|mm7|chr14 (30682070-30681165)
               

               
               5-367, gnl|Mm7|chr14 (30681264-30681596)
               

               
               5-367, gnl|oryCun1|scaffold_213225 (82479-81661)
               

               
               5-367, gnl|panTro1|chr8 (49810109-49811029)
               

               
               5-367, gnl|rheMac2|chr9 (48013203-48012285)
               

               
               5-367, gnl|rn3|chr16 (8787741-8786889)

	5-367, gnl\|bosTau2\|chr28 (29466511-29466870)
	5-367, gnl\|canFam2\|chr28 (3553176-3554105)
	5-367, gnl\|hg17\|chr10 (49482339-49483259)
	5-367, gnl\|Hg17\|chr10 (49483168-49482814)
	5-367, gnl\|loxAfr1\|scaffold_26046 (1611-2552)
	5-367, gnl\|mm7\|chr14 (30682070-30681165)
	5-367, gnl\|Mm7\|chr14 (30681264-30681596)
	5-367, gnl\|oryCun1\|scaffold_213225 (82479-81661)
	5-367, gnl\|panTro1\|chr8 (49810109-49811029)
	5-367, gnl\|rheMac2\|chr9 (48013203-48012285)
	5-367, gnl\|rn3\|chr16 (8787741-8786889)