Non-Coding RNA Search

mCP1-MI-P-CP1-nzb-c-21-0-UI.s1

Sequence:


               
               CATCTCCAATAAAGCACAATAGAGGAAAGGAAACAGGAAACCTTTCTTCAAAAAGAAGAA
AGAAGAGCCTCTGTTTNAAAAGGGGAGAGGAGCAATTGTNTTAAGGGCCTTGGTTATGGG
ATCCCTTCATTTCTACAGGAACCAGCTGTGGCCAAAGACCCTCTGCCCATCAGTCCTGGC
TCTAGTCCTTCTTGTTCCCCATCACATGATGGGAATGGGAAAATGAGAAACCAACCAGGG
AATGTGGCTCTTCTTATCCCCCAACTAAGGAGTTAGGCAGGGATAGCAATAAGAAATTCT
GCATATTTCTGAAGGTGGAAAAAAAAGGTCAAGAAATCTGTAGATACTTGATTAGCTAGT
AATGGAGGCTGGAGGATGGAAGTCAGATACAAATTTAAAAGAGGATCCATTAACGAATCA
GAATTTAAGTAGTGGCTGCTGAAATTTGAATTTTATTTTACTTTTCAACAATTTGAATGG
AAAATGCATGTACTTGGGAATGCATTCACAAAGTATTTTATCAAATGGTAGCATGTTCTA
CACAGTGCTCTGTACTGTGCACTTATTTTATGTCTTGGAGATTATTTTATGTAAGACATA
GAGAGGTGTCTTATTCCTCTTAAAGGTTGCCTTAAGAGTGTAGTATTTTGGAATGACTAT
ACCATAATTCAAAGAGACACTGAGACCTTTAAATTGTTTCCAGTATTTTTTTTATAATAA
ATATTGTGCCATCAGTATAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCTCCAATAAAGCACAATAGAGGAAAGGAAACAGGAAACCTTTCTTCAAAAAGAAGAA
AGAAGAGCCTCTGTTTNAAAAGGGGAGAGGAGCAATTGTNTTAAGGGCCTTGGTTATGGG
ATCCCTTCATTTCTACAGGAACCAGCTGTGGCCAAAGACCCTCTGCCCATCAGTCCTGGC
TCTAGTCCTTCTTGTTCCCCATCACATGATGGGAATGGGAAAATGAGAAACCAACCAGGG
AATGTGGCTCTTCTTATCCCCCAACTAAGGAGTTAGGCAGGGATAGCAATAAGAAATTCT
GCATATTTCTGAAGGTGGAAAAAAAAGGTCAAGAAATCTGTAGATACTTGATTAGCTAGT
AATGGAGGCTGGAGGATGGAAGTCAGATACAAATTTAAAAGAGGATCCATTAACGAATCA
GAATTTAAGTAGTGGCTGCTGAAATTTGAATTTTATTTTACTTTTCAACAATTTGAATGG
AAAATGCATGTACTTGGGAATGCATTCACAAAGTATTTTATCAAATGGTAGCATGTTCTA
CACAGTGCTCTGTACTGTGCACTTATTTTATGTCTTGGAGATTATTTTATGTAAGACATA
GAGAGGTGTCTTATTCCTCTTAAAGGTTGCCTTAAGAGTGTAGTATTTTGGAATGACTAT
ACCATAATTCAAAGAGACACTGAGACCTTTAAATTGTTTCCAGTATTTTTTTTATAATAA
ATATTGTGCCATCAGTATAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-297, + strand, RNAz p=0.999949

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-297, + strand, RNAz p=0.999949

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               161-279, - strand, RNAmicro p=0.996328

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               161-279, - strand, RNAmicro p=0.996328

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-739, gnl|bosTau2|chr26 (4311605-4310856)
               

               
               1-739, gnl|Hg17|chr10 (53748214-53748964)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-739, gnl|bosTau2|chr26 (4311605-4310856)
               

               
               1-739, gnl|Hg17|chr10 (53748214-53748964)

	1-739, gnl\|bosTau2\|chr26 (4311605-4310856)
	1-739, gnl\|Hg17\|chr10 (53748214-53748964)