Non-Coding RNA Search

mCP1-MI-P-CP1-nzb-i-01-0-UI.s1

Sequence:


               
               AGAACAGGAGCGTGACCGNGAGAGGAAAGCTCTCCGGAGNGAGCGAACCAGACCACCGGG
AGGTCCGCCGCGACGTCGGGCAGGAGCAGGCGCCGGGGAGAGGAGCCAGGAGGGGGCGTG
CAATNTGGCCCGAGGGTCCTGAGCTGAAACTCAACACCCGCCTTTAGAGGGAACGTCCCC
CTTTCCCCTCCGCCCCTTCTCTTCCCCTCCCTTTTCCCCTCCCTCCTTTCTCTTAATCCC
TGGGACTGAGCCCCGCGCCGGAGCGGAGAGGGCCCGAGGGGAGGAGAGAGGAGCTGCACT
GAGAGGGCGCCGGGAGCCCGGGAAGGGGAGGGAAAGGGAGCTGCGAGCCGGGGGTGAGCC
TCGGGGCCACGCGCCACCCCTCCCCCCGGAGCCTTCCTAGTCGTCTCAGTGTCCCCCAAA
CCCCACCTTCAGGCGAGTCCGCAGGACCCTGGTCCCTGCTCCTCCTTCGCATTCTCTTTG
GTCCTTCTTTTGCTTTGTGGCCTTTCTCTCGGTTCCCAGAGACACCTGGGCTGCCCCGAG
CCCTGGGGCGCGCGGAACGGCCCCACAAAGGGTGCGAGTGAGCAGGACGAGGGGGCTGGT
TCCGAGGGCCAGGGGGCTGAGGGCTGGAGAGGGGCGGGTGGGCCCCTCTGGCGCGTGGGG
AAGGCCGTTCCGCCCCTTCGAGCCGGGCCCTCGCGCGGGTGGCGAGGCGCCGTCGCCGCG
CCCCCAGATCCCCGGGCGAGTGTGCCTGCGTGGAACCCGCCTCCCCAGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACAGGAGCGTGACCGNGAGAGGAAAGCTCTCCGGAGNGAGCGAACCAGACCACCGGG
AGGTCCGCCGCGACGTCGGGCAGGAGCAGGCGCCGGGGAGAGGAGCCAGGAGGGGGCGTG
CAATNTGGCCCGAGGGTCCTGAGCTGAAACTCAACACCCGCCTTTAGAGGGAACGTCCCC
CTTTCCCCTCCGCCCCTTCTCTTCCCCTCCCTTTTCCCCTCCCTCCTTTCTCTTAATCCC
TGGGACTGAGCCCCGCGCCGGAGCGGAGAGGGCCCGAGGGGAGGAGAGAGGAGCTGCACT
GAGAGGGCGCCGGGAGCCCGGGAAGGGGAGGGAAAGGGAGCTGCGAGCCGGGGGTGAGCC
TCGGGGCCACGCGCCACCCCTCCCCCCGGAGCCTTCCTAGTCGTCTCAGTGTCCCCCAAA
CCCCACCTTCAGGCGAGTCCGCAGGACCCTGGTCCCTGCTCCTCCTTCGCATTCTCTTTG
GTCCTTCTTTTGCTTTGTGGCCTTTCTCTCGGTTCCCAGAGACACCTGGGCTGCCCCGAG
CCCTGGGGCGCGCGGAACGGCCCCACAAAGGGTGCGAGTGAGCAGGACGAGGGGGCTGGT
TCCGAGGGCCAGGGGGCTGAGGGCTGGAGAGGGGCGGGTGGGCCCCTCTGGCGCGTGGGG
AAGGCCGTTCCGCCCCTTCGAGCCGGGCCCTCGCGCGGGTGGCGAGGCGCCGTCGCCGCG
CCCCCAGATCCCCGGGCGAGTGTGCCTGCGTGGAACCCGCCTCCCCAGCGGCCGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               110-323, - strand, RNAz p=0.9997

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               110-323, - strand, RNAz p=0.9997

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               236-362, + strand, RNAmicro p=0.999842
               

               
               226-379, - strand, RNAmicro p=0.998589

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               236-362, + strand, RNAmicro p=0.999842
               

               
               226-379, - strand, RNAmicro p=0.998589

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-738, gnl|bosTau2|chr10 (13761334-13762074)
               

               
               1-738, gnl|Hg17|chr14 (22905628-22904796)
               

               
               1-738, gnl|Mm7|chr14 (49793413-49792782)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-738, gnl|bosTau2|chr10 (13761334-13762074)
               

               
               1-738, gnl|Hg17|chr14 (22905628-22904796)
               

               
               1-738, gnl|Mm7|chr14 (49793413-49792782)

	236-362, + strand, RNAmicro p=0.999842
	226-379, - strand, RNAmicro p=0.998589

	1-738, gnl\|bosTau2\|chr10 (13761334-13762074)
	1-738, gnl\|Hg17\|chr14 (22905628-22904796)
	1-738, gnl\|Mm7\|chr14 (49793413-49792782)