Non-Coding RNA Search

mCP1-MI-P-CP1-nzb-k-22-0-UI.s1

Sequence:


               
               AAACCGAACCAGAGATTTAGGATTAAAAGTTTGCGTAAGCNAGAGGCCCAAACCCCTCAT
CTGGAAGGATCCAGAGAAGGGCAAAGGTCTGTGCTTCAAGCCACATGGACACCCAAGGGC
CAGACTTAGGGTGAGAACCCACATCTTCTGACCACCGGAGGAGCGTTCCTCCAAGCCACC
CAAAACCCCAGGGTTGGCCCAGGCTTCCTTGCCTCAAGGACACCCCAAGGTCAGGCTCCG
CCCCCGCTCCCCCAGGGTGGAGGGAGGATATTAAGAAAAGGGCCATAGGAGAAAGGGAGG
AAGGTAATCAGAAGCCCAGAAAAGGGCAGCAGAGGAAGCCTAGCCCGAGATGGAGAAAAG
GGGCGAGGCTTGCCCTTCTCCCAGCTCGTGCAGGGTGAGAGAATGGGGAGGAGAGGCAAA
CGCCCCACCCTGTCCCCTGAAAAATGCTCCAGTCTGCTCCGCGGCTGCAGCTGTTCCAGG
CTCCGAATCAAGGTCACCCGGATAAGGAAAGATAGCGAAAGTGTTAATGGGGCATCAGGC
GCTGCCAAGAGGTTTCCCCTCCTCGCCAGGGGCACCCCTCTCCCAGGACAGGGACCAACC
ACCGGCTTTCCGGGACCCTGAAGGAGTACATAGCCGGCCCCCACCCCTCGCTACCACTTA
GGAACCCAGCAGGGGCCAAGGGATCACAATCTTTGCACCAGGAGTCCTAACAAGAAAAGG
GGAGGGGGAAATGCCCTTCACCTCGTCCTGCTTCCTTCCTCCCCGCTGTGACTCAGCGCA
TGGGGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACCGAACCAGAGATTTAGGATTAAAAGTTTGCGTAAGCNAGAGGCCCAAACCCCTCAT
CTGGAAGGATCCAGAGAAGGGCAAAGGTCTGTGCTTCAAGCCACATGGACACCCAAGGGC
CAGACTTAGGGTGAGAACCCACATCTTCTGACCACCGGAGGAGCGTTCCTCCAAGCCACC
CAAAACCCCAGGGTTGGCCCAGGCTTCCTTGCCTCAAGGACACCCCAAGGTCAGGCTCCG
CCCCCGCTCCCCCAGGGTGGAGGGAGGATATTAAGAAAAGGGCCATAGGAGAAAGGGAGG
AAGGTAATCAGAAGCCCAGAAAAGGGCAGCAGAGGAAGCCTAGCCCGAGATGGAGAAAAG
GGGCGAGGCTTGCCCTTCTCCCAGCTCGTGCAGGGTGAGAGAATGGGGAGGAGAGGCAAA
CGCCCCACCCTGTCCCCTGAAAAATGCTCCAGTCTGCTCCGCGGCTGCAGCTGTTCCAGG
CTCCGAATCAAGGTCACCCGGATAAGGAAAGATAGCGAAAGTGTTAATGGGGCATCAGGC
GCTGCCAAGAGGTTTCCCCTCCTCGCCAGGGGCACCCCTCTCCCAGGACAGGGACCAACC
ACCGGCTTTCCGGGACCCTGAAGGAGTACATAGCCGGCCCCCACCCCTCGCTACCACTTA
GGAACCCAGCAGGGGCCAAGGGATCACAATCTTTGCACCAGGAGTCCTAACAAGAAAAGG
GGAGGGGGAAATGCCCTTCACCTCGTCCTGCTTCCTTCCTCCCCGCTGTGACTCAGCGCA
TGGGGCGGCCGC

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               1-223, - strand, RNAz p=0.985211
               

               
               34-153, - strand, RNAz p=0.993887
               

               
               302-407, - strand, RNAz p=0.827889
               

               
               574-686, - strand, RNAz p=0.616143

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-223, - strand, RNAz p=0.985211
               

               
               34-153, - strand, RNAz p=0.993887
               

               
               302-407, - strand, RNAz p=0.827889
               

               
               574-686, - strand, RNAz p=0.616143

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-792, gnl|bosTau2|chr25 (25399041-25398252)
               

               
               1-792, gnl|canFam2|chr6 (21091168-21091844)
               

               
               1-792, gnl|hg17|chr16 (29984747-29985388)
               

               
               1-792, gnl|Hg17|chr16 (29985697-29984927)
               

               
               1-792, gnl|loxAfr1|scaffold_1209 (107107-106450)
               

               
               1-792, gnl|mm7|chr7 (122895607-122894996)
               

               
               1-792, gnl|Mm7|chr7 (122894694-122895425)
               

               
               1-792, gnl|monDom2|scaffold_5 (119673748-119672997)
               

               
               1-792, gnl|oryCun1|scaffold_204194 (18974-18304)
               

               
               1-792, gnl|panTro1|chr18_random (16688143-16688784)
               

               
               1-792, gnl|rheMac2|chr20 (28046032-28046657)
               

               
               1-792, gnl|rn3|chr1 (186124358-186123741)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-792, gnl|bosTau2|chr25 (25399041-25398252)
               

               
               1-792, gnl|canFam2|chr6 (21091168-21091844)
               

               
               1-792, gnl|hg17|chr16 (29984747-29985388)
               

               
               1-792, gnl|Hg17|chr16 (29985697-29984927)
               

               
               1-792, gnl|loxAfr1|scaffold_1209 (107107-106450)
               

               
               1-792, gnl|mm7|chr7 (122895607-122894996)
               

               
               1-792, gnl|Mm7|chr7 (122894694-122895425)
               

               
               1-792, gnl|monDom2|scaffold_5 (119673748-119672997)
               

               
               1-792, gnl|oryCun1|scaffold_204194 (18974-18304)
               

               
               1-792, gnl|panTro1|chr18_random (16688143-16688784)
               

               
               1-792, gnl|rheMac2|chr20 (28046032-28046657)
               

               
               1-792, gnl|rn3|chr1 (186124358-186123741)

	1-223, - strand, RNAz p=0.985211
	34-153, - strand, RNAz p=0.993887
	302-407, - strand, RNAz p=0.827889
	574-686, - strand, RNAz p=0.616143

	1-792, gnl\|bosTau2\|chr25 (25399041-25398252)
	1-792, gnl\|canFam2\|chr6 (21091168-21091844)
	1-792, gnl\|hg17\|chr16 (29984747-29985388)
	1-792, gnl\|Hg17\|chr16 (29985697-29984927)
	1-792, gnl\|loxAfr1\|scaffold_1209 (107107-106450)
	1-792, gnl\|mm7\|chr7 (122895607-122894996)
	1-792, gnl\|Mm7\|chr7 (122894694-122895425)
	1-792, gnl\|monDom2\|scaffold_5 (119673748-119672997)
	1-792, gnl\|oryCun1\|scaffold_204194 (18974-18304)
	1-792, gnl\|panTro1\|chr18_random (16688143-16688784)
	1-792, gnl\|rheMac2\|chr20 (28046032-28046657)
	1-792, gnl\|rn3\|chr1 (186124358-186123741)