Non-Coding RNA Search

mCP1-MI-P-CP1-nzc-a-22-0-UI.s1

Sequence:


               
               CCACCAGCACCCACGCCCACCTCGGCCACGGACGACGAGGTCGAGGACGACGCGGAGGAC
GATGCGGCAGATACGCCGGGAGTGCCCCCGAGACAAGCTGGGCCCCCGGGTGCCCCTGGG
GGCGCGGGCGTCGGGGGCCCACGGCTGCCCAGACCGTGAGGGGGCGGTGGGGGCAGCACA
GCAGCGCTGGCCGGGCCGTTAAGCAGCGTCTGCGGCAGCAGGTTGGGGGGCACCGTGAGC
TGGGGGCCTCCGCCACCCCCCGGGTTAGGAAGCCCAGTTACTAACCCACCGTGTGTCCCG
CGCCGAGACGCCACCGACGCCGCAGCTGAAGACGAGTTGGGGCTCTGGCGGTTCAGCTCC
GGGGGTCCCTCCTCGGGGGTGGGCTTGGGGAAGCCGTTGGGGCCTCCCAGGCCGTTGGGC
AGCCGCGCGGCGTGGCTGCTGCTTCCCAGGCTCACTGGAGGTGGCGGGTACTCGAAGCGG
CTGCGCTGTTCCACCGCGGCAGCGGCGGCGGCTGCGGCGGCAGCAGCGCTCAGGCCATAG
CGCTCCAGGCCTGACGGGGCCGCCAGCACCGCGGGCTTGCTGGAACCATCGACGTGGTTG
AGCTGTTGTTGCTGCTGCTGCTGTTGCTGCTGCTGCTGTTGTTGCTGCTGCGCAGCGGCC
GC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCAGCACCCACGCCCACCTCGGCCACGGACGACGAGGTCGAGGACGACGCGGAGGAC
GATGCGGCAGATACGCCGGGAGTGCCCCCGAGACAAGCTGGGCCCCCGGGTGCCCCTGGG
GGCGCGGGCGTCGGGGGCCCACGGCTGCCCAGACCGTGAGGGGGCGGTGGGGGCAGCACA
GCAGCGCTGGCCGGGCCGTTAAGCAGCGTCTGCGGCAGCAGGTTGGGGGGCACCGTGAGC
TGGGGGCCTCCGCCACCCCCCGGGTTAGGAAGCCCAGTTACTAACCCACCGTGTGTCCCG
CGCCGAGACGCCACCGACGCCGCAGCTGAAGACGAGTTGGGGCTCTGGCGGTTCAGCTCC
GGGGGTCCCTCCTCGGGGGTGGGCTTGGGGAAGCCGTTGGGGCCTCCCAGGCCGTTGGGC
AGCCGCGCGGCGTGGCTGCTGCTTCCCAGGCTCACTGGAGGTGGCGGGTACTCGAAGCGG
CTGCGCTGTTCCACCGCGGCAGCGGCGGCGGCTGCGGCGGCAGCAGCGCTCAGGCCATAG
CGCTCCAGGCCTGACGGGGCCGCCAGCACCGCGGGCTTGCTGGAACCATCGACGTGGTTG
AGCTGTTGTTGCTGCTGCTGCTGTTGCTGCTGCTGCTGTTGTTGCTGCTGCGCAGCGGCC
GC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               198-317, - strand, RNAz p=0.935093
               

               
               358-477, - strand, RNAz p=0.740508

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-317, - strand, RNAz p=0.935093
               

               
               358-477, - strand, RNAz p=0.740508

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-662, gnl|bosTau2|chr10 (61707372-61708017)
               

               
               1-662, gnl|Hg17|chr14 (76562903-76563612)
               

               
               1-662, gnl|Mm7|chr12 (84885574-84886220)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-662, gnl|bosTau2|chr10 (61707372-61708017)
               

               
               1-662, gnl|Hg17|chr14 (76562903-76563612)
               

               
               1-662, gnl|Mm7|chr12 (84885574-84886220)

	198-317, - strand, RNAz p=0.935093
	358-477, - strand, RNAz p=0.740508

	1-662, gnl\|bosTau2\|chr10 (61707372-61708017)
	1-662, gnl\|Hg17\|chr14 (76562903-76563612)
	1-662, gnl\|Mm7\|chr12 (84885574-84886220)