Non-Coding RNA Search

mCP1-MI-P-CP1-nzc-i-19-0-UI.s1

Sequence:


               
               ATAAAGTCTTCCATNTCAGAGTCATATTCATCATCATCTTCCTCCTCNTCAAATTCTCGC
TGCCTTTTGTAACCACTAGGAAAGGGAAGCCTNTGGNGACCTTGGGCAGGTCTGTAGCCA
GATAAGGAAGGCCTCATTCCATTCATCTGTCCGTTGCTGGACCGGCTGATTATGTTCTTG
GAAGAAATTGTTTCTGAGACAACAGTGCATTTAGGCCTTAGAGGGGGACCTGAGGTACTA
ACTGTTCGCCCAGGTCCCAAGCTGCTCACTGGTCTTCCAGGACCTGAACTGCTGACAGTG
CGTCCTGCTGGGACCGGGCCACTTACTGATCGCCCAGGGCCATTGATTGACCGCCCAGGG
GGGACTGAGCCACTCACTGGTCGTCGAAGGTCATGTGGACCGCTTGCAGGCCTCCCAGGG
CCACCAGCACTGCCCACAGATCTCCCAGAACCACTGGAGACACCAATGGGTCTTCCGGGG
CCACTGGAGCTGCTTGCAGGTCGTCCAAGGCCACCTGTACCACTGACTGTCCGTCCTGGA
GAATTTAAATTACTGGCTGGCTTCCTGATCCCACCGACTGATCGCTCAGGTCCTGAGCTG
GAGCTGCCATTCTGGCGCCTGGGCACAGAGCCAGAACTAACTATGGGCCGAGCAGGCCCT
GTGGTAGGCCGGCCAGGGGCTAAACTGGAGCTGCCACCTGGCTGCCTGGCACCTGGACTG
CGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAAGTCTTCCATNTCAGAGTCATATTCATCATCATCTTCCTCCTCNTCAAATTCTCGC
TGCCTTTTGTAACCACTAGGAAAGGGAAGCCTNTGGNGACCTTGGGCAGGTCTGTAGCCA
GATAAGGAAGGCCTCATTCCATTCATCTGTCCGTTGCTGGACCGGCTGATTATGTTCTTG
GAAGAAATTGTTTCTGAGACAACAGTGCATTTAGGCCTTAGAGGGGGACCTGAGGTACTA
ACTGTTCGCCCAGGTCCCAAGCTGCTCACTGGTCTTCCAGGACCTGAACTGCTGACAGTG
CGTCCTGCTGGGACCGGGCCACTTACTGATCGCCCAGGGCCATTGATTGACCGCCCAGGG
GGGACTGAGCCACTCACTGGTCGTCGAAGGTCATGTGGACCGCTTGCAGGCCTCCCAGGG
CCACCAGCACTGCCCACAGATCTCCCAGAACCACTGGAGACACCAATGGGTCTTCCGGGG
CCACTGGAGCTGCTTGCAGGTCGTCCAAGGCCACCTGTACCACTGACTGTCCGTCCTGGA
GAATTTAAATTACTGGCTGGCTTCCTGATCCCACCGACTGATCGCTCAGGTCCTGAGCTG
GAGCTGCCATTCTGGCGCCTGGGCACAGAGCCAGAACTAACTATGGGCCGAGCAGGCCCT
GTGGTAGGCCGGCCAGGGGCTAAACTGGAGCTGCCACCTGGCTGCCTGGCACCTGGACTG
CGGCCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N417_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N417_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               540-719, + strand, RNAz p=0.96521

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               540-719, + strand, RNAz p=0.96521

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-102, gnl|bosTau2|chr29 (18222572-18222468)
               

               
               1-102, gnl|Hg17|chr11 (18590509-18590613)
               

               
               1-102, gnl|Mm7|chr7 (43172270-43172368)
               


               
               107-719, gnl|bosTau2|chr29 (18220890-18220278)
               

               
               107-719, gnl|Hg17|chr11 (18592686-18593304)
               

               
               107-719, gnl|Mm7|chr7 (43173653-43174268)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-102, gnl|bosTau2|chr29 (18222572-18222468)
               

               
               1-102, gnl|Hg17|chr11 (18590509-18590613)
               

               
               1-102, gnl|Mm7|chr7 (43172270-43172368)
               


               
               107-719, gnl|bosTau2|chr29 (18220890-18220278)
               

               
               107-719, gnl|Hg17|chr11 (18592686-18593304)
               

               
               107-719, gnl|Mm7|chr7 (43173653-43174268)

	1-102, gnl\|bosTau2\|chr29 (18222572-18222468)
	1-102, gnl\|Hg17\|chr11 (18590509-18590613)
	1-102, gnl\|Mm7\|chr7 (43172270-43172368)

	107-719, gnl\|bosTau2\|chr29 (18220890-18220278)
	107-719, gnl\|Hg17\|chr11 (18592686-18593304)
	107-719, gnl\|Mm7\|chr7 (43173653-43174268)