Non-Coding RNA Search

mE3-MI-P-E3-aak-e-05-1-UM.s1

Sequence:


               
               TTGAACCCAGCAACCTCATCGTACAAAGTCGGTATCCCATCATCCTCTTTTGCACCCTCT
CAGACTTTAACAAACACTGGAAATTTTAAATTTGGAGATCAAGGAGGATTGAAAATAGGT
GTGTCATCAGATTTGGGGTCTGTAAACCCCATGAGTGAAGAAGGCTTTAAATTTCCTAAA
CCAATAGGAGATGTTAAATTTGGAGTTTCATATGATTTTAAGCTTGAAGAAGTTAAAAAA
GACAGTAAAAATGATAATAATTTTAAGTTTGGACTTTTTTCTGGATTAAGCAATCCAGCT
CCTTTAGCTCCATTTCAGTTTGGGGTGTGTAATCTTGGGCAGCAAGAAAAGAAAGAGGAA
GTGCTTGAATCTTCCTCTGCAGGCTTTAGCTTTTGTTCCGTGTGTCATTAACCTTCCCCC
TCTTGTTGCTGACACCAAAGTGACCTCTGAGAGCAAGAACAGCTTCAGTTTTGGAACCAC
AGACACCAAGAGTGTTTCAGTGGATCCTTTCACATGTACGACTCCAGAAGCAAAAAAAAA
AAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAACCCAGCAACCTCATCGTACAAAGTCGGTATCCCATCATCCTCTTTTGCACCCTCT
CAGACTTTAACAAACACTGGAAATTTTAAATTTGGAGATCAAGGAGGATTGAAAATAGGT
GTGTCATCAGATTTGGGGTCTGTAAACCCCATGAGTGAAGAAGGCTTTAAATTTCCTAAA
CCAATAGGAGATGTTAAATTTGGAGTTTCATATGATTTTAAGCTTGAAGAAGTTAAAAAA
GACAGTAAAAATGATAATAATTTTAAGTTTGGACTTTTTTCTGGATTAAGCAATCCAGCT
CCTTTAGCTCCATTTCAGTTTGGGGTGTGTAATCTTGGGCAGCAAGAAAAGAAAGAGGAA
GTGCTTGAATCTTCCTCTGCAGGCTTTAGCTTTTGTTCCGTGTGTCATTAACCTTCCCCC
TCTTGTTGCTGACACCAAAGTGACCTCTGAGAGCAAGAACAGCTTCAGTTTTGGAACCAC
AGACACCAAGAGTGTTTCAGTGGATCCTTTCACATGTACGACTCCAGAAGCAAAAAAAAA
AAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               399-515, - strand, RNAz p=0.715941

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               399-515, - strand, RNAz p=0.715941

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-545, gnl|bosTau2|chr23 (30201288-30201829)
               

               
               3-545, gnl|Hg17|chr6 (17737724-17737186)
               

               
               3-545, gnl|Mm7|chr13 (46169575-46169040)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-545, gnl|bosTau2|chr23 (30201288-30201829)
               

               
               3-545, gnl|Hg17|chr6 (17737724-17737186)
               

               
               3-545, gnl|Mm7|chr13 (46169575-46169040)

	3-545, gnl\|bosTau2\|chr23 (30201288-30201829)
	3-545, gnl\|Hg17\|chr6 (17737724-17737186)
	3-545, gnl\|Mm7\|chr13 (46169575-46169040)