Non-Coding RNA Search

mE3-MI-P-E3-aak-h-06-1-UM.s1

Sequence:


               
               TGCTTAAGTTTTCCCCCCCAGTCCCAGATTAAACTCGGAAAATTCTACTTCAAAATATTT
CCCATTTATAGAATGCATTTATTTTCAGTGGACTCCCATTTTCATCAGCTTCCCATATCA
TAATTTTACCCAGAAACTTGACCACGCAGTCTTAATTTAGATCTAGAGCAAAAGAAAGCA
TTAAATAACACCTTGGATCTCTTGAGGAAAAGCTAAGTTTGCCTACAATTTACACATTCC
ATGGGAAAAGAAGAGCCATAGTTCTTTTTAAAAGTCATTAATGAAACTTACTGTTATGAT
TAAAAATTGTAGTGAAAAGCCTTAAGTCCCAAATTTTAAAGCAGCAGTAATTTAATTTTT
TTATCAGTGTTCATGTTTTGCACAAGCTAAATGCAGTGATAGGTGAGTTTTTGAGTACAG
TAACTGCCTTCATCACATTTGTGAAGTTGTTAAGTTGATGAGGGCAAGGTTTTGTTTATT
TGCGTGTTTAATTTGTATATGTCTAAAGATATTTGGAAATCTTGACAGGAATTAAACATA
TATGCAAATTTGTATNTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTTAAGTTTTCCCCCCCAGTCCCAGATTAAACTCGGAAAATTCTACTTCAAAATATTT
CCCATTTATAGAATGCATTTATTTTCAGTGGACTCCCATTTTCATCAGCTTCCCATATCA
TAATTTTACCCAGAAACTTGACCACGCAGTCTTAATTTAGATCTAGAGCAAAAGAAAGCA
TTAAATAACACCTTGGATCTCTTGAGGAAAAGCTAAGTTTGCCTACAATTTACACATTCC
ATGGGAAAAGAAGAGCCATAGTTCTTTTTAAAAGTCATTAATGAAACTTACTGTTATGAT
TAAAAATTGTAGTGAAAAGCCTTAAGTCCCAAATTTTAAAGCAGCAGTAATTTAATTTTT
TTATCAGTGTTCATGTTTTGCACAAGCTAAATGCAGTGATAGGTGAGTTTTTGAGTACAG
TAACTGCCTTCATCACATTTGTGAAGTTGTTAAGTTGATGAGGGCAAGGTTTTGTTTATT
TGCGTGTTTAATTTGTATATGTCTAAAGATATTTGGAAATCTTGACAGGAATTAAACATA
TATGCAAATTTGTATNTAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               348-506, + strand, RNAz p=0.995766

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               348-506, + strand, RNAz p=0.995766

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of CR749280, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of CR749280, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               4-564, gnl|bosTau2|chr20 (20973583-20973020)
               

               
               4-564, gnl|canFam2|chr4 (73208110-73207222)
               

               
               4-564, gnl|echTel1|scaffold_319099 (16762-17634)
               

               
               4-564, gnl|galGal2|chrZ_random (11166278-11167166)
               

               
               4-564, gnl|hg17|chr5 (38976419-38977285)
               

               
               4-564, gnl|Hg17|chr5 (38977467-38976910)
               

               
               4-564, gnl|loxAfr1|scaffold_4627 (62814-61928)
               

               
               4-564, gnl|mm7|chr15 (6624625-6623805)
               

               
               4-564, gnl|Mm7|chr15 (6623664-6624166)
               

               
               4-564, gnl|monDom2|scaffold_20 (32709729-32708801)
               

               
               4-564, gnl|oryCun1|scaffold_173135 (34398-33497)
               

               
               4-564, gnl|panTro1|chr4 (77769282-77768414)
               

               
               4-564, gnl|rheMac2|chr6 (38771439-38772306)
               

               
               4-564, gnl|rn3|chr2 (56001419-56000596)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-564, gnl|bosTau2|chr20 (20973583-20973020)
               

               
               4-564, gnl|canFam2|chr4 (73208110-73207222)
               

               
               4-564, gnl|echTel1|scaffold_319099 (16762-17634)
               

               
               4-564, gnl|galGal2|chrZ_random (11166278-11167166)
               

               
               4-564, gnl|hg17|chr5 (38976419-38977285)
               

               
               4-564, gnl|Hg17|chr5 (38977467-38976910)
               

               
               4-564, gnl|loxAfr1|scaffold_4627 (62814-61928)
               

               
               4-564, gnl|mm7|chr15 (6624625-6623805)
               

               
               4-564, gnl|Mm7|chr15 (6623664-6624166)
               

               
               4-564, gnl|monDom2|scaffold_20 (32709729-32708801)
               

               
               4-564, gnl|oryCun1|scaffold_173135 (34398-33497)
               

               
               4-564, gnl|panTro1|chr4 (77769282-77768414)
               

               
               4-564, gnl|rheMac2|chr6 (38771439-38772306)
               

               
               4-564, gnl|rn3|chr2 (56001419-56000596)

	4-564, gnl\|bosTau2\|chr20 (20973583-20973020)
	4-564, gnl\|canFam2\|chr4 (73208110-73207222)
	4-564, gnl\|echTel1\|scaffold_319099 (16762-17634)
	4-564, gnl\|galGal2\|chrZ_random (11166278-11167166)
	4-564, gnl\|hg17\|chr5 (38976419-38977285)
	4-564, gnl\|Hg17\|chr5 (38977467-38976910)
	4-564, gnl\|loxAfr1\|scaffold_4627 (62814-61928)
	4-564, gnl\|mm7\|chr15 (6624625-6623805)
	4-564, gnl\|Mm7\|chr15 (6623664-6624166)
	4-564, gnl\|monDom2\|scaffold_20 (32709729-32708801)
	4-564, gnl\|oryCun1\|scaffold_173135 (34398-33497)
	4-564, gnl\|panTro1\|chr4 (77769282-77768414)
	4-564, gnl\|rheMac2\|chr6 (38771439-38772306)
	4-564, gnl\|rn3\|chr2 (56001419-56000596)