mE3-MI-P-E3-aal-c-03-1-UM.s1
|
CGTCCTCCGGCCTGTGGGCNAAAGTGAATGTGGACGAAGTTGGTGTTGAGGCCCTGGGCA
GGCTGCTGGTTGTCTACCCCTGGACTCAGAGGTTCTTCGAGTCCTTTGGNGACCTGTCCA
ATGCCGATGCCGTCATGGGCAATCCCAAGGTGAAGGCCCACGGCAAGAAGGTGCTCCAGT
CCTTCAGTGACGGCCTGAAACATCTCGACAACCTCAAGGGCACCTTTGCTAAGCTGAGCG
AGCTGCACTGTGACCAGCTGCACGTGGATCCTGAGAACTTCAGGCTCCTGGGCAACGTGA
TAGTGGTTGTTCTGGCTCGCCGCCTTGGCCATGACTTCAACCCGGATGTGCAGGCTGCTT
TTCAGAAGGTGGTGGCTGGTGTGGCCAATGCCCTGGCCCACAAGTACCACTAAGTTCCCC
TTCCTGATTTCCAGGAGGAGCCCTTTTTCCTCTGAACCCAAAAACTGGATATGGAAATAT
TATGAAGAGTTTTGAGCATCTGGCCTCTGCGTAATAAAAACATTTATTTTCATTGCAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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CGTCCTCCGGCCTGTGGGCNAAAGTGAATGTGGACGAAGTTGGTGTTGAGGCCCTGGGCA
GGCTGCTGGTTGTCTACCCCTGGACTCAGAGGTTCTTCGAGTCCTTTGGNGACCTGTCCA
ATGCCGATGCCGTCATGGGCAATCCCAAGGTGAAGGCCCACGGCAAGAAGGTGCTCCAGT
CCTTCAGTGACGGCCTGAAACATCTCGACAACCTCAAGGGCACCTTTGCTAAGCTGAGCG
AGCTGCACTGTGACCAGCTGCACGTGGATCCTGAGAACTTCAGGCTCCTGGGCAACGTGA
TAGTGGTTGTTCTGGCTCGCCGCCTTGGCCATGACTTCAACCCGGATGTGCAGGCTGCTT
TTCAGAAGGTGGTGGCTGGTGTGGCCAATGCCCTGGCCCACAAGTACCACTAAGTTCCCC
TTCCTGATTTCCAGGAGGAGCCCTTTTTCCTCTGAACCCAAAAACTGGATATGGAAATAT
TATGAAGAGTTTTGAGCATCTGGCCTCTGCGTAATAAAAACATTTATTTTCATTGCAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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60-282, gnl|bosTau2|chr15 (31547969-31548191) |
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60-282, gnl|canFam2|chr21 (31297816-31297969) |
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60-282, gnl|danRer3|chr14 (52027702-52027855) |
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60-282, gnl|dasNov1|scaffold_13030 (34989-34836) |
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60-282, gnl|echTel1|scaffold_291727 (50072-49919) |
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60-282, gnl|fr1|chrUn (269727330-269727483) |
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60-282, gnl|galGal2|chr1 (188136630-188136477) |
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60-282, gnl|hg17|chr11 (5204379-5204532) |
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60-282, gnl|Hg17|chr11 (5204607-5204385) |
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60-282, gnl|loxAfr1|scaffold_3994 (95353-95200) |
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60-282, gnl|mm7|chr7 (99864254-99864406) |
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60-282, gnl|Mm7|chr7 (99883651-99883429) |
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60-282, gnl|monDom2|scaffold_111 (1430434-1430587) |
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60-282, gnl|oryCun1|scaffold_212048 (55125-55278) |
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60-282, gnl|panTro1|chr9 (5283210-5283363) |
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60-282, gnl|rheMac2|chr14 (68175209-68175056) |
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60-282, gnl|rn3|chr1 (161701009-161701162) |
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60-282, gnl|tetNig1|chr2 (3548897-3548740) |
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60-282, gnl|xenTro1|scaffold_289 (335758-335605) |
| |
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284-537, gnl|bosTau2|chr15 (31549093-31549347) |
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284-537, gnl|Mm7|chr7 (99882773-99882512) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
60-282, gnl|bosTau2|chr15 (31547969-31548191) |
|
60-282, gnl|canFam2|chr21 (31297816-31297969) |
|
60-282, gnl|danRer3|chr14 (52027702-52027855) |
|
60-282, gnl|dasNov1|scaffold_13030 (34989-34836) |
|
60-282, gnl|echTel1|scaffold_291727 (50072-49919) |
|
60-282, gnl|fr1|chrUn (269727330-269727483) |
|
60-282, gnl|galGal2|chr1 (188136630-188136477) |
|
60-282, gnl|hg17|chr11 (5204379-5204532) |
|
60-282, gnl|Hg17|chr11 (5204607-5204385) |
|
60-282, gnl|loxAfr1|scaffold_3994 (95353-95200) |
|
60-282, gnl|mm7|chr7 (99864254-99864406) |
|
60-282, gnl|Mm7|chr7 (99883651-99883429) |
|
60-282, gnl|monDom2|scaffold_111 (1430434-1430587) |
|
60-282, gnl|oryCun1|scaffold_212048 (55125-55278) |
|
60-282, gnl|panTro1|chr9 (5283210-5283363) |
|
60-282, gnl|rheMac2|chr14 (68175209-68175056) |
|
60-282, gnl|rn3|chr1 (161701009-161701162) |
|
60-282, gnl|tetNig1|chr2 (3548897-3548740) |
|
60-282, gnl|xenTro1|scaffold_289 (335758-335605) |
| |
|
284-537, gnl|bosTau2|chr15 (31549093-31549347) |
|
284-537, gnl|Mm7|chr7 (99882773-99882512) |
