Non-Coding RNA Search

mE3-MI-P-E3-aam-d-12-1-UM.s1

Sequence:


               
               CTCCCGCATCACGAGGACCAGTGTGCCTTCCGAGATGTGTTACTCTGACCCCTGCCGCCG
TGCATGAGTCCGCCGCCGCCGGAACCAGGACACCTCCCTCTCTCCCCTTCCGTGCCCTGC
GCCCACAGTCTGTCTGGTCCTTCGGCGAATGCATCCTGCTCAGTACAGACTGAAGTTTCT
GTCATTGAGAACAGAGTGATCCATAAACCTGGAAAAGAGAGAGAGGGTCTCAGATGCAGC
CAGGGCATCACAAGCCCAGCCTAGCAACTGGGCCTGACCAGGTGCTGAGAAGTCCTGGAC
CTGTGGTCACCACACCCAGTTCCTCTTCCGGATTCCAGCATCTCACAGCCTTCATGGTCA
GTGGAATCAGTCTCGGTTCTTTCTGCTTCTACTCTAAGCCCGTCTCCAAGAGTTTTCTCA
GGGGCCAAGGTGGTAGAAAAACAAGTGCCCCCCCCCACTTGCAAAATGTGCGAAGATGGG
TCTGCTGGTTCTTATTTTCCCCCTTTTGCTCATTCCAAGTAATTCTCTGAAATTTAGCAA
TGATGCTACTTCATGTTTAGATATTGCTAATAGATATCATTTATTAAGCAAAAAAAAAAA
AAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCGCATCACGAGGACCAGTGTGCCTTCCGAGATGTGTTACTCTGACCCCTGCCGCCG
TGCATGAGTCCGCCGCCGCCGGAACCAGGACACCTCCCTCTCTCCCCTTCCGTGCCCTGC
GCCCACAGTCTGTCTGGTCCTTCGGCGAATGCATCCTGCTCAGTACAGACTGAAGTTTCT
GTCATTGAGAACAGAGTGATCCATAAACCTGGAAAAGAGAGAGAGGGTCTCAGATGCAGC
CAGGGCATCACAAGCCCAGCCTAGCAACTGGGCCTGACCAGGTGCTGAGAAGTCCTGGAC
CTGTGGTCACCACACCCAGTTCCTCTTCCGGATTCCAGCATCTCACAGCCTTCATGGTCA
GTGGAATCAGTCTCGGTTCTTTCTGCTTCTACTCTAAGCCCGTCTCCAAGAGTTTTCTCA
GGGGCCAAGGTGGTAGAAAAACAAGTGCCCCCCCCCACTTGCAAAATGTGCGAAGATGGG
TCTGCTGGTTCTTATTTTCCCCCTTTTGCTCATTCCAAGTAATTCTCTGAAATTTAGCAA
TGATGCTACTTCATGTTTAGATATTGCTAATAGATATCATTTATTAAGCAAAAAAAAAAA
AAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               241-351, - strand, RNAz p=0.984668

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               241-351, - strand, RNAz p=0.984668

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               241-461, gnl|bosTau2|chr5 (26331319-26331541)
               

               
               241-461, gnl|canFam2|chr27 (8766048-8765568)
               

               
               241-461, gnl|dasNov1|scaffold_258086 (628-160)
               

               
               241-461, gnl|hg17|chr12 (47444607-47445100)
               

               
               241-461, gnl|Hg17|chr12 (47444835-47444607)
               

               
               241-461, gnl|loxAfr1|scaffold_12527 (64103-64581)
               

               
               241-461, gnl|mm7|chr15 (98574589-98575072)
               

               
               241-461, gnl|oryCun1|scaffold_201178 (55872-55388)
               

               
               241-461, gnl|panTro1|chr10 (48538928-48539421)
               

               
               241-461, gnl|rheMac2|chr11 (45885400-45885895)
               

               
               241-461, gnl|rn3|chr7 (137414805-137415268)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               241-461, gnl|bosTau2|chr5 (26331319-26331541)
               

               
               241-461, gnl|canFam2|chr27 (8766048-8765568)
               

               
               241-461, gnl|dasNov1|scaffold_258086 (628-160)
               

               
               241-461, gnl|hg17|chr12 (47444607-47445100)
               

               
               241-461, gnl|Hg17|chr12 (47444835-47444607)
               

               
               241-461, gnl|loxAfr1|scaffold_12527 (64103-64581)
               

               
               241-461, gnl|mm7|chr15 (98574589-98575072)
               

               
               241-461, gnl|oryCun1|scaffold_201178 (55872-55388)
               

               
               241-461, gnl|panTro1|chr10 (48538928-48539421)
               

               
               241-461, gnl|rheMac2|chr11 (45885400-45885895)
               

               
               241-461, gnl|rn3|chr7 (137414805-137415268)

	241-461, gnl\|bosTau2\|chr5 (26331319-26331541)
	241-461, gnl\|canFam2\|chr27 (8766048-8765568)
	241-461, gnl\|dasNov1\|scaffold_258086 (628-160)
	241-461, gnl\|hg17\|chr12 (47444607-47445100)
	241-461, gnl\|Hg17\|chr12 (47444835-47444607)
	241-461, gnl\|loxAfr1\|scaffold_12527 (64103-64581)
	241-461, gnl\|mm7\|chr15 (98574589-98575072)
	241-461, gnl\|oryCun1\|scaffold_201178 (55872-55388)
	241-461, gnl\|panTro1\|chr10 (48538928-48539421)
	241-461, gnl\|rheMac2\|chr11 (45885400-45885895)
	241-461, gnl\|rn3\|chr7 (137414805-137415268)