Non-Coding RNA Search

mE4-MI-P-E4-abo-e-07-1-UM.s1

Sequence:


               
               TCTGTGTTGGTTNTACTAAAAAACGCAACAATCAGATTCGGAAGACCTCTTACGCTCAGC
ACCAACAAGTCCGCCAAATCCGGAAGAAGATGATGGAAATCATGACCCGAGAGGTGCAGA
CAAATGACTTGAAAGAGGTGGTCAATAAATTGATTCCAGACAGCATTGGAAAGGACATAG
AAAAGGCTTGCCCGTCTATTTATCCGCTTCATGACGTCTTCGTTAGAAAAGTAAAAATGC
TGAAGAAGCCCAAGTTTGAATTGGGAAAACTCATGGAGCTACATGGTGAAGGTAGTAGTT
CTGGAAAAGCTACTGGGGACGAGACAGGTGCTAAAGTTTAACGAGCTGATGGCTATGAGC
CCCCAGTGCAAGAATCTGTTTAAAATTCAGATTTTAATGGTGACAAATAAAAGACTTATT
TGTGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTGTTGGTTNTACTAAAAAACGCAACAATCAGATTCGGAAGACCTCTTACGCTCAGC
ACCAACAAGTCCGCCAAATCCGGAAGAAGATGATGGAAATCATGACCCGAGAGGTGCAGA
CAAATGACTTGAAAGAGGTGGTCAATAAATTGATTCCAGACAGCATTGGAAAGGACATAG
AAAAGGCTTGCCCGTCTATTTATCCGCTTCATGACGTCTTCGTTAGAAAAGTAAAAATGC
TGAAGAAGCCCAAGTTTGAATTGGGAAAACTCATGGAGCTACATGGTGAAGGTAGTAGTT
CTGGAAAAGCTACTGGGGACGAGACAGGTGCTAAAGTTTAACGAGCTGATGGCTATGAGC
CCCCAGTGCAAGAATCTGTTTAAAATTCAGATTTTAATGGTGACAAATAAAAGACTTATT
TGTGAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6QAP5_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6QAP5_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               124-442, - strand, RNAz p=0.787367
               

               
               160-319, - strand, RNAz p=0.971596

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               124-442, - strand, RNAz p=0.787367
               

               
               160-319, - strand, RNAz p=0.971596

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-442, gnl|bosTau2|chr18 (43553367-43553787)
               

               
               1-442, gnl|Hg17|chr7 (97660139-97659696)
               

               
               1-442, gnl|Mm7|chr14 (82841939-82841491)
               


               
               4-439, gnl|bosTau2|chr13 (46751088-46750652)
               

               
               4-439, gnl|Hg17|chr7 (97660136-97659699)
               

               
               4-439, gnl|Mm7|chr14 (82841936-82841497)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-442, gnl|bosTau2|chr18 (43553367-43553787)
               

               
               1-442, gnl|Hg17|chr7 (97660139-97659696)
               

               
               1-442, gnl|Mm7|chr14 (82841939-82841491)
               


               
               4-439, gnl|bosTau2|chr13 (46751088-46750652)
               

               
               4-439, gnl|Hg17|chr7 (97660136-97659699)
               

               
               4-439, gnl|Mm7|chr14 (82841936-82841497)

	124-442, - strand, RNAz p=0.787367
	160-319, - strand, RNAz p=0.971596

	1-442, gnl\|bosTau2\|chr18 (43553367-43553787)
	1-442, gnl\|Hg17\|chr7 (97660139-97659696)
	1-442, gnl\|Mm7\|chr14 (82841939-82841491)

	4-439, gnl\|bosTau2\|chr13 (46751088-46750652)
	4-439, gnl\|Hg17\|chr7 (97660136-97659699)
	4-439, gnl\|Mm7\|chr14 (82841936-82841497)