Non-Coding RNA Search

mE4-MI-P-E4-abo-g-03-1-UM.s1

Sequence:


               
               TGAAAAACTTCAAGGCAAGATCAATGTTGGGGGCCAACCGAAGGTTCTTGTTAAGTGTAA
TGAAATAATCAACTGGCTGGGTAAGAACCCGACTGCGGGGAAGGAAGAATTTTAACATTA
GCCGAAGGAGCTGGGGAAAGTTTGCAACCCCATCATTTCCCAGCTTTACCAGGGTGCAGG
AGGCTTTCCCGGAGGAATTCCTGGGGGCTTCCCTGGGGGCGGAGCTCCCCCATTTGGTGG
TGCTTTTTTTGGGCCCCCCCTTGGGGGGGTTGGTTTAGCCCAACTTGTTTAGATTTAGCA
TTTTTCCCCCTGACATTGAAGGACCCAAATTTTTTGCAAATTCCCTGGCAGTTGTAAAGT
TGAGCTGCTTTTGTAAATAACTGGGCCTTCTTGGTACTTGGATTTGGGATTTGCCCAGGG
AAAGGGAATTACCTTTCCCTTTTTTAGCACTGTTTTTTTAAGTGGAAAATGCAATGTTTT
AAATAAAACTATTTTAAATTGGCCCCCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAAACTTCAAGGCAAGATCAATGTTGGGGGCCAACCGAAGGTTCTTGTTAAGTGTAA
TGAAATAATCAACTGGCTGGGTAAGAACCCGACTGCGGGGAAGGAAGAATTTTAACATTA
GCCGAAGGAGCTGGGGAAAGTTTGCAACCCCATCATTTCCCAGCTTTACCAGGGTGCAGG
AGGCTTTCCCGGAGGAATTCCTGGGGGCTTCCCTGGGGGCGGAGCTCCCCCATTTGGTGG
TGCTTTTTTTGGGCCCCCCCTTGGGGGGGTTGGTTTAGCCCAACTTGTTTAGATTTAGCA
TTTTTCCCCCTGACATTGAAGGACCCAAATTTTTTGCAAATTCCCTGGCAGTTGTAAAGT
TGAGCTGCTTTTGTAAATAACTGGGCCTTCTTGGTACTTGGATTTGGGATTTGCCCAGGG
AAAGGGAATTACCTTTCCCTTTTTTAGCACTGTTTTTTTAAGTGGAAAATGCAATGTTTT
AAATAAAACTATTTTAAATTGGCCCCCAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57085215|ref|XP_536438.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57085215|ref|XP_536438.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-278, - strand, RNAz p=0.948778

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-278, - strand, RNAz p=0.948778

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-501, gnl|bosTau2|chr3 (47921519-47922032)
               

               
               1-501, gnl|Hg17|chr3 (139083503-139084006)
               


               
               2-392, gnl|bosTau2|chr11 (15266548-15266155)
               

               
               2-392, gnl|Hg17|chr7 (10265843-10266236)
               

               
               2-392, gnl|Mm7|chr10 (14447930-14447610)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-501, gnl|bosTau2|chr3 (47921519-47922032)
               

               
               1-501, gnl|Hg17|chr3 (139083503-139084006)
               


               
               2-392, gnl|bosTau2|chr11 (15266548-15266155)
               

               
               2-392, gnl|Hg17|chr7 (10265843-10266236)
               

               
               2-392, gnl|Mm7|chr10 (14447930-14447610)

	1-501, gnl\|bosTau2\|chr3 (47921519-47922032)
	1-501, gnl\|Hg17\|chr3 (139083503-139084006)

	2-392, gnl\|bosTau2\|chr11 (15266548-15266155)
	2-392, gnl\|Hg17\|chr7 (10265843-10266236)
	2-392, gnl\|Mm7\|chr10 (14447930-14447610)