Non-Coding RNA Search

mE4-MI-P-E4-abp-a-03-1-UM.s1

Sequence:


               
               AGAAGAAGCAGAGGTTGCTGCCCCNAGCTGAGAAGAAGGCTGCGGGCAAAGGCGATGTCC
CCACCAAGAGGCCGCCTGTCCTTCGAGNAGGGGTGAATACTGTCACCACCTTGGTGGAGA
ACAAGAAGGCTCAGCTGGTGGTGATCGCACACGACGTGGATCCCATTGAGCTGGTGGTCT
TCCTGCCGGCCCTGTGTCGGAAGATGGGGGTCCCCTACTGNATCATCAAGGGCAAGGCCA
GGCTGGGGCGGCTGGTCCACAGGAAGACCTGCACCACCGTGGCCTTCACGCAAGTCAACT
CGGAAGACAAGGGTGCTCCGGCTNAGCTGGTGGAAGCTNTCCGGACCAATTACAACGACA
GGTACGACGAGATCCGGCGTCACTGGGGAGGGAACGTCCTGGGTCCCAAGTCGGTGGCTC
GNATCGCCAAGCTGGAGAAGGCGAAGGCCAAAGAACTGGCCACCAAGCTGGGCTAAGTTN
ACACCGCGGAGGCTTCTGTACATAAAAGTTATTAATAAAACTTTNAGCCAANTACCCGGC
GAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGAAGCAGAGGTTGCTGCCCCNAGCTGAGAAGAAGGCTGCGGGCAAAGGCGATGTCC
CCACCAAGAGGCCGCCTGTCCTTCGAGNAGGGGTGAATACTGTCACCACCTTGGTGGAGA
ACAAGAAGGCTCAGCTGGTGGTGATCGCACACGACGTGGATCCCATTGAGCTGGTGGTCT
TCCTGCCGGCCCTGTGTCGGAAGATGGGGGTCCCCTACTGNATCATCAAGGGCAAGGCCA
GGCTGGGGCGGCTGGTCCACAGGAAGACCTGCACCACCGTGGCCTTCACGCAAGTCAACT
CGGAAGACAAGGGTGCTCCGGCTNAGCTGGTGGAAGCTNTCCGGACCAATTACAACGACA
GGTACGACGAGATCCGGCGTCACTGGGGAGGGAACGTCCTGGGTCCCAAGTCGGTGGCTC
GNATCGCCAAGCTGGAGAAGGCGAAGGCCAAAGAACTGGCCACCAAGCTGGGCTAAGTTN
ACACCGCGGAGGCTTCTGTACATAAAAGTTATTAATAAAACTTTNAGCCAANTACCCGGC
GAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5T8U2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5T8U2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-239, + strand, RNAz p=0.569421

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, + strand, RNAz p=0.569421

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-518, gnl|bosTau2|chr6 (31693724-31693207)
               

               
               1-518, gnl|Hg17|chr14 (69422285-69421762)
               

               
               1-518, gnl|Mm7|chrX (161628898-161629412)
               


               
               6-506, gnl|bosTau2|chr12 (39471401-39470922)
               

               
               6-506, gnl|Hg17|chr13 (97352075-97352538)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-518, gnl|bosTau2|chr6 (31693724-31693207)
               

               
               1-518, gnl|Hg17|chr14 (69422285-69421762)
               

               
               1-518, gnl|Mm7|chrX (161628898-161629412)
               


               
               6-506, gnl|bosTau2|chr12 (39471401-39470922)
               

               
               6-506, gnl|Hg17|chr13 (97352075-97352538)

	1-518, gnl\|bosTau2\|chr6 (31693724-31693207)
	1-518, gnl\|Hg17\|chr14 (69422285-69421762)
	1-518, gnl\|Mm7\|chrX (161628898-161629412)

	6-506, gnl\|bosTau2\|chr12 (39471401-39470922)
	6-506, gnl\|Hg17\|chr13 (97352075-97352538)