Non-Coding RNA Search

mE4-MI-P-E4-abq-c-07-1-UM.s1

Sequence:


               
               GAACCCCTTCGGCTAAGGTGCTCGGTTCTTCCGAGGAAGCTAAGGCCGCGTTGGGGTGAG
GCCCTCACTTCATCCGGCGACTAGCACCGCGCCTGGCAGCCCCCACCTAGCATTGGTCCG
CACCATGGCTTCCGTCTCGGAGCTCGCCTGNATTTACTCTGCCCTCCTTCTGCACGACGA
TGAGGTTACGGTCACGGAGGATAAGATCAATGCTCTCATTAAAGCAGCAGGTGTAAATGT
TGAGCCCTTCTGGCCAGGCTTGTTTGCAAAGGCTCTGGCCAATGTCAAAATCGGGAGCCT
CATTTGCAATGTGGGGGCTGGTGGACCTGCCCCAGCAGCTGGTGCTGCACCAGCAGGAGG
TCCTGCCCCAGCCACCACTGCTGCCCCAGCTGAGGAGAAGAAAGTAGAAGCAAAGAAAGA
AGGATCTGAGGAGTCTGATGATTATATGGGCTTTGGTCTTTTTGACTAAACTTCTATAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACCCCTTCGGCTAAGGTGCTCGGTTCTTCCGAGGAAGCTAAGGCCGCGTTGGGGTGAG
GCCCTCACTTCATCCGGCGACTAGCACCGCGCCTGGCAGCCCCCACCTAGCATTGGTCCG
CACCATGGCTTCCGTCTCGGAGCTCGCCTGNATTTACTCTGCCCTCCTTCTGCACGACGA
TGAGGTTACGGTCACGGAGGATAAGATCAATGCTCTCATTAAAGCAGCAGGTGTAAATGT
TGAGCCCTTCTGGCCAGGCTTGTTTGCAAAGGCTCTGGCCAATGTCAAAATCGGGAGCCT
CATTTGCAATGTGGGGGCTGGTGGACCTGCCCCAGCAGCTGGTGCTGCACCAGCAGGAGG
TCCTGCCCCAGCCACCACTGCTGCCCCAGCTGAGGAGAAGAAAGTAGAAGCAAAGAAAGA
AGGATCTGAGGAGTCTGATGATTATATGGGCTTTGGTCTTTTTGACTAAACTTCTATAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q56K14_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q56K14_BOVIN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               4-122, + strand, RNAz p=0.748571
               

               
               4-105, + strand, RNAz p=0.931479

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-122, + strand, RNAz p=0.748571
               

               
               4-105, + strand, RNAz p=0.931479

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001003, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001003, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               4-197, gnl|bosTau2|chr9 (22396730-22396537)
               

               
               4-197, gnl|canFam2|chr30 (36340231-36340346)
               

               
               4-197, gnl|danRer3|chr20 (20295172-20295273)
               

               
               4-197, gnl|dasNov1|scaffold_16508 (14523-14638)
               

               
               4-197, gnl|echTel1|scaffold_211698 (3269-3141)
               

               
               4-197, gnl|fr1|chrUn (280369613-280369709)
               

               
               4-197, gnl|hg17|chr15 (67532213-67532342)
               

               
               4-197, gnl|Hg17|chr15 (67532221-67532414)
               

               
               4-197, gnl|loxAfr1|scaffold_7512 (30360-30236)
               

               
               4-197, gnl|mm7|chr9 (61941109-61940998)
               

               
               4-197, gnl|Mm7|chr9 (61941099-61940924)
               

               
               4-197, gnl|monDom2|scaffold_12 (42068437-42068310)
               

               
               4-197, gnl|oryCun1|scaffold_205015 (91859-91987)
               

               
               4-197, gnl|panTro1|chr16 (68160187-68160316)
               

               
               4-197, gnl|rheMac2|chr7 (48101058-48101187)
               

               
               4-197, gnl|rn3|chr8 (66066609-66066498)
               

               
               4-197, gnl|tetNig1|chr21 (2648238-2648324)
               

               
               4-197, gnl|xenTro1|scaffold_161 (1280798-1280902)
               


               
               350-478, gnl|bosTau2|chr13 (46155426-46155553)
               

               
               350-478, gnl|Hg17|chr2 (176891280-176891134)
               

               
               350-478, gnl|Mm7|chr7 (123382736-123382590)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-197, gnl|bosTau2|chr9 (22396730-22396537)
               

               
               4-197, gnl|canFam2|chr30 (36340231-36340346)
               

               
               4-197, gnl|danRer3|chr20 (20295172-20295273)
               

               
               4-197, gnl|dasNov1|scaffold_16508 (14523-14638)
               

               
               4-197, gnl|echTel1|scaffold_211698 (3269-3141)
               

               
               4-197, gnl|fr1|chrUn (280369613-280369709)
               

               
               4-197, gnl|hg17|chr15 (67532213-67532342)
               

               
               4-197, gnl|Hg17|chr15 (67532221-67532414)
               

               
               4-197, gnl|loxAfr1|scaffold_7512 (30360-30236)
               

               
               4-197, gnl|mm7|chr9 (61941109-61940998)
               

               
               4-197, gnl|Mm7|chr9 (61941099-61940924)
               

               
               4-197, gnl|monDom2|scaffold_12 (42068437-42068310)
               

               
               4-197, gnl|oryCun1|scaffold_205015 (91859-91987)
               

               
               4-197, gnl|panTro1|chr16 (68160187-68160316)
               

               
               4-197, gnl|rheMac2|chr7 (48101058-48101187)
               

               
               4-197, gnl|rn3|chr8 (66066609-66066498)
               

               
               4-197, gnl|tetNig1|chr21 (2648238-2648324)
               

               
               4-197, gnl|xenTro1|scaffold_161 (1280798-1280902)
               


               
               350-478, gnl|bosTau2|chr13 (46155426-46155553)
               

               
               350-478, gnl|Hg17|chr2 (176891280-176891134)
               

               
               350-478, gnl|Mm7|chr7 (123382736-123382590)

	4-122, + strand, RNAz p=0.748571
	4-105, + strand, RNAz p=0.931479

	4-197, gnl\|bosTau2\|chr9 (22396730-22396537)
	4-197, gnl\|canFam2\|chr30 (36340231-36340346)
	4-197, gnl\|danRer3\|chr20 (20295172-20295273)
	4-197, gnl\|dasNov1\|scaffold_16508 (14523-14638)
	4-197, gnl\|echTel1\|scaffold_211698 (3269-3141)
	4-197, gnl\|fr1\|chrUn (280369613-280369709)
	4-197, gnl\|hg17\|chr15 (67532213-67532342)
	4-197, gnl\|Hg17\|chr15 (67532221-67532414)
	4-197, gnl\|loxAfr1\|scaffold_7512 (30360-30236)
	4-197, gnl\|mm7\|chr9 (61941109-61940998)
	4-197, gnl\|Mm7\|chr9 (61941099-61940924)
	4-197, gnl\|monDom2\|scaffold_12 (42068437-42068310)
	4-197, gnl\|oryCun1\|scaffold_205015 (91859-91987)
	4-197, gnl\|panTro1\|chr16 (68160187-68160316)
	4-197, gnl\|rheMac2\|chr7 (48101058-48101187)
	4-197, gnl\|rn3\|chr8 (66066609-66066498)
	4-197, gnl\|tetNig1\|chr21 (2648238-2648324)
	4-197, gnl\|xenTro1\|scaffold_161 (1280798-1280902)

	350-478, gnl\|bosTau2\|chr13 (46155426-46155553)
	350-478, gnl\|Hg17\|chr2 (176891280-176891134)
	350-478, gnl\|Mm7\|chr7 (123382736-123382590)