Non-Coding RNA Search

mE4-MI-P-E4-ahd-g-10-1-UM.s1

Sequence:


               
               CAGAGAGCATCAAAATAATTGTCATCCTGCCTGCAATATNTGAATTTTTAAATCTCAATC
TATTTATTAATATTTAATATTTTACATTATTTATATGGGGAATATTGATTCATTGATCAA
AGTATTTATAATGTAACTTTTATGTGATGAAAATGGGTATCTATTAACATATGTGTTATT
TATGATTCCTGTATCCTGTGACTATTTCACTTGACCCTCTATTTTCTCTGATTAACTAGG
CAAATCTATGTTTTACAAGGTTTTTCTCAGGGGCCAACTAGGTAGCTGACCTAAGCAAGA
CTCTGTGGGTTGTGTGTTTATTTCACTTGATGGAATAATGAATGTTTATAAATGAAATGA
TGCCATCCCATTGCTGCCTATTTGAGACTATGTCTGTCTTCTGAGCCACTGCTTTGATGG
CATGTCAGACAGCACTTGAATGTGTCAGGTGATATGACTTGTACCCTGATAAAAACATAG
CATCTCATCTCATGCCTGGTGCCTCAGAATATTACTGAAAACTGTGATTTCACCCAATGG
AAAATAATACACTTGTTTATCAATATTTAATATGCACAAATAAAGTATAATTTCAGCACT
AAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGAGCATCAAAATAATTGTCATCCTGCCTGCAATATNTGAATTTTTAAATCTCAATC
TATTTATTAATATTTAATATTTTACATTATTTATATGGGGAATATTGATTCATTGATCAA
AGTATTTATAATGTAACTTTTATGTGATGAAAATGGGTATCTATTAACATATGTGTTATT
TATGATTCCTGTATCCTGTGACTATTTCACTTGACCCTCTATTTTCTCTGATTAACTAGG
CAAATCTATGTTTTACAAGGTTTTTCTCAGGGGCCAACTAGGTAGCTGACCTAAGCAAGA
CTCTGTGGGTTGTGTGTTTATTTCACTTGATGGAATAATGAATGTTTATAAATGAAATGA
TGCCATCCCATTGCTGCCTATTTGAGACTATGTCTGTCTTCTGAGCCACTGCTTTGATGG
CATGTCAGACAGCACTTGAATGTGTCAGGTGATATGACTTGTACCCTGATAAAAACATAG
CATCTCATCTCATGCCTGGTGCCTCAGAATATTACTGAAAACTGTGATTTCACCCAATGG
AAAATAATACACTTGTTTATCAATATTTAATATGCACAAATAAAGTATAATTTCAGCACT
AAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               380-494, - strand, RNAz p=0.888236

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               380-494, - strand, RNAz p=0.888236

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-601, gnl|bosTau2|chr5 (27396086-27396696)
               

               
               3-601, gnl|Hg17|chr12 (66835415-66834815)
               

               
               3-601, gnl|Mm7|chr10 (117840578-117841195)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-601, gnl|bosTau2|chr5 (27396086-27396696)
               

               
               3-601, gnl|Hg17|chr12 (66835415-66834815)
               

               
               3-601, gnl|Mm7|chr10 (117840578-117841195)

	3-601, gnl\|bosTau2\|chr5 (27396086-27396696)
	3-601, gnl\|Hg17\|chr12 (66835415-66834815)
	3-601, gnl\|Mm7\|chr10 (117840578-117841195)