Non-Coding RNA Search

mE4-MI-P-E4-ahg-c-10-1-UM.s1

Sequence:


               
               GAACCCCTTCGCCAACAGGCATATGCATATCCTGCTACTGCAGATGCACCTATGATTGGT
TATCCGATGCCAACAGGATATTGTCAATAAGACTTTAGAAGTATATGTAAATGTCTGTTT
TTCATAATTGCTCTTTATATTGTGTGTTATCAGACAAGATAGTTATTTAAGAAACATGGG
AAATGCAGAAATGACTGCAGTGCAGCAGTAATTATGGTGCACTTTTTCGCTATTTAAGTT
GGATATTTCTCTACATTCCTGAAACAATTTTTAGGTTTTTTTGTACTAGAAAATGCAGGC
AGTGTTTTCACAAAAGTAAATGTACAGTGATTTGAAATACAATAAATGAAGGCAATGCAT
GGCCTTCCANATAAAAAATATTTGAAGACTGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACCCCTTCGCCAACAGGCATATGCATATCCTGCTACTGCAGATGCACCTATGATTGGT
TATCCGATGCCAACAGGATATTGTCAATAAGACTTTAGAAGTATATGTAAATGTCTGTTT
TTCATAATTGCTCTTTATATTGTGTGTTATCAGACAAGATAGTTATTTAAGAAACATGGG
AAATGCAGAAATGACTGCAGTGCAGCAGTAATTATGGTGCACTTTTTCGCTATTTAAGTT
GGATATTTCTCTACATTCCTGAAACAATTTTTAGGTTTTTTTGTACTAGAAAATGCAGGC
AGTGTTTTCACAAAAGTAAATGTACAGTGATTTGAAATACAATAAATGAAGGCAATGCAT
GGCCTTCCANATAAAAAATATTTGAAGACTGAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               12-126, - strand, RNAz p=0.97824
               

               
               167-279, - strand, RNAz p=0.750606

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               12-126, - strand, RNAz p=0.97824
               

               
               167-279, - strand, RNAz p=0.750606

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-397, gnl|bosTau2|chr17 (31000589-31000977)
               

               
               12-397, gnl|Hg17|chr17 (59926581-59926200)
               

               
               12-397, gnl|Mm7|chr11 (48708701-48708362)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-397, gnl|bosTau2|chr17 (31000589-31000977)
               

               
               12-397, gnl|Hg17|chr17 (59926581-59926200)
               

               
               12-397, gnl|Mm7|chr11 (48708701-48708362)

	12-126, - strand, RNAz p=0.97824
	167-279, - strand, RNAz p=0.750606

	12-397, gnl\|bosTau2\|chr17 (31000589-31000977)
	12-397, gnl\|Hg17\|chr17 (59926581-59926200)
	12-397, gnl\|Mm7\|chr11 (48708701-48708362)