Non-Coding RNA Search

mE4-MI-P-E4-ahi-e-01-1-UM.s1

Sequence:


               
               GAACCCCTTCGACTAGTTNTAGATCGCGAGCCTCTGACCATCAGCTCCCGCTCCTGGCTN
ACCGCTGTTCGCTCTTCCCGAGGAACAAGTCGGTCAGGAAGCCGCGCCGCAGACATGGCC
TTTAAGGACACCGGCAAGACTCCCGTGGAGCCGGAAGTTGCGATTCACCGGATTCGGATC
ACCCTCACCAGCCGCAACGTGAAGTCTTTGGAGAAGGTGTGTGCTGACCTGATCAGAGGC
GCGAAGGAGAAGAACCTCAAAGTGAAGGGACCGGTGCGGATGCCCACCAAGACTCTGAGA
ATAACTACGAGAAAAACTCCTTGTGGTGAAGGTTCCAAGACTTGGGATCGTTTTCAGATG
AGGATCCACAAGCGACTCATAGACCTGCACAGCCCTTCTGAGATTGTTAAGCAGATCACA
TCCATCAGTATTGAACCAGGAGTCGAGGTTGAAGTCACCATTGCAGATGCTTAAGTCCAA
CTTTTTAATAAATTGATACTCAGTTGTTAACAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACCCCTTCGACTAGTTNTAGATCGCGAGCCTCTGACCATCAGCTCCCGCTCCTGGCTN
ACCGCTGTTCGCTCTTCCCGAGGAACAAGTCGGTCAGGAAGCCGCGCCGCAGACATGGCC
TTTAAGGACACCGGCAAGACTCCCGTGGAGCCGGAAGTTGCGATTCACCGGATTCGGATC
ACCCTCACCAGCCGCAACGTGAAGTCTTTGGAGAAGGTGTGTGCTGACCTGATCAGAGGC
GCGAAGGAGAAGAACCTCAAAGTGAAGGGACCGGTGCGGATGCCCACCAAGACTCTGAGA
ATAACTACGAGAAAAACTCCTTGTGGTGAAGGTTCCAAGACTTGGGATCGTTTTCAGATG
AGGATCCACAAGCGACTCATAGACCTGCACAGCCCTTCTGAGATTGTTAAGCAGATCACA
TCCATCAGTATTGAACCAGGAGTCGAGGTTGAAGTCACCATTGCAGATGCTTAAGTCCAA
CTTTTTAATAAATTGATACTCAGTTGTTAACAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27673653|ref|XP_236835.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27673653|ref|XP_236835.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               44-133, - strand, RNAz p=0.587871
               

               
               211-370, + strand, RNAz p=0.982276

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-133, - strand, RNAz p=0.587871
               

               
               211-370, + strand, RNAz p=0.982276

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               44-525, gnl|bosTau2|chr10 (55974253-55974734)
               

               
               44-525, gnl|Hg17|chr5 (107957138-107957614)
               

               
               44-525, gnl|Mm7|chr4 (3762702-3761632)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-525, gnl|bosTau2|chr10 (55974253-55974734)
               

               
               44-525, gnl|Hg17|chr5 (107957138-107957614)
               

               
               44-525, gnl|Mm7|chr4 (3762702-3761632)

	44-133, - strand, RNAz p=0.587871
	211-370, + strand, RNAz p=0.982276

	44-525, gnl\|bosTau2\|chr10 (55974253-55974734)
	44-525, gnl\|Hg17\|chr5 (107957138-107957614)
	44-525, gnl\|Mm7\|chr4 (3762702-3761632)