Non-Coding RNA Search

mE6-MI-P-E6-ace-h-08-1-UM.s1

Sequence:


               
               CTGCAGGAGGAGAAGAAAACAATTCACATTGCATNTGCATGTCCTCATTGGTAGATAATG
CACTCATCATGTGGGAAGTCTGCTGGTAAACTGGNGACTGCTGAAGGTTTCCATTTGCTG
AGCCAGTTGAAGGAAATAGCTCTGACTGAATCTGGGCAGCTGCCTGGCAGATACTCTGTT
GCATCTCCATCACCATTGCAGCTGATGATTCCATCACTTGCTGTTGCTGTTGTTGCTGCT
GTTGATTAGATAACGCATTTTCAGTCTGTGGGTGAACACTTTCAGCTCTTCCAGCTATTA
AATTATCTGGTCTGGTATGGACTGCTGGCTCTGTTGAGGAAAACATTCCAGGGCTTACGC
TATTTTGAATTTGACTGACTTGTTGAAAAATGTCTGCACTAAGCTGTTCTTGAACATTCT
CATTACTATCTGGAGCAGAAAATAAAACTGAAGATAACTGTTGTTGTGCCTCGTAAAACC
TGTTGGACCAAGTCAACATTTCCATTGCTGCCACTGGCAGTACTGCCTGTAAAAATTCCT
GCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAGGAGGAGAAGAAAACAATTCACATTGCATNTGCATGTCCTCATTGGTAGATAATG
CACTCATCATGTGGGAAGTCTGCTGGTAAACTGGNGACTGCTGAAGGTTTCCATTTGCTG
AGCCAGTTGAAGGAAATAGCTCTGACTGAATCTGGGCAGCTGCCTGGCAGATACTCTGTT
GCATCTCCATCACCATTGCAGCTGATGATTCCATCACTTGCTGTTGCTGTTGTTGCTGCT
GTTGATTAGATAACGCATTTTCAGTCTGTGGGTGAACACTTTCAGCTCTTCCAGCTATTA
AATTATCTGGTCTGGTATGGACTGCTGGCTCTGTTGAGGAAAACATTCCAGGGCTTACGC
TATTTTGAATTTGACTGACTTGTTGAAAAATGTCTGCACTAAGCTGTTCTTGAACATTCT
CATTACTATCTGGAGCAGAAAATAAAACTGAAGATAACTGTTGTTGTGCCTCGTAAAACC
TGTTGGACCAAGTCAACATTTCCATTGCTGCCACTGGCAGTACTGCCTGTAAAAATTCCT
GCGGCCGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               81-240, + strand, RNAz p=0.677068

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-240, + strand, RNAz p=0.677068

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               126-257, - strand, RNAmicro p=0.99955

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               126-257, - strand, RNAmicro p=0.99955

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-542, gnl|bosTau2|chr18 (30309850-30309310)
               

               
               1-542, gnl|Hg17|chr16 (68284164-68283621)
               

               
               1-542, gnl|Mm7|chr8 (105968197-105967657)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-542, gnl|bosTau2|chr18 (30309850-30309310)
               

               
               1-542, gnl|Hg17|chr16 (68284164-68283621)
               

               
               1-542, gnl|Mm7|chr8 (105968197-105967657)

	1-542, gnl\|bosTau2\|chr18 (30309850-30309310)
	1-542, gnl\|Hg17\|chr16 (68284164-68283621)
	1-542, gnl\|Mm7\|chr8 (105968197-105967657)