Non-Coding RNA Search

mE6-MI-P-E6-ahm-h-10-1-UM.s1

Sequence:


               
               TACCATTTTTAGATTACTTCTGTATANATGAAAAGCATGAAAAAGTATTGCAATGAGGAT
ACAGAGGAACTAATGAGTACAGAGTCCAGTGAGACAGACTNTGATATAAGTTAACTTTCA
ACTGATTGAGTTCACTAACATTGGAAGCCATTAAGCAGATATTAATTTTCTTGTGTACAT
TTTGAGCAAGATATTCAACTACAGACTGAAGAAATACATCTCTTTTATAATCTCTTTGAA
TCTGAGACTCTAAGTCTCTATTCATTCTCCAAGTCATGAGATAAACCAGACATACTGGCC
TATATAAAAACATGATTTGTTTTATTTTAATGTAAATATTTAACTTTGGTTTCTTCAAGT
CACTCTTTTTCCTTGAACACAATTCATTATGTAAAGATTAAAAACTCTAACTTTTCAGAG
TATAAACATCACAATAGTAGAAAAGCTTACATGTTTTAGAAATACAAAATTTTTAAGAGG
CAGGTNTACTATTTCTTGTCAAATTAAAATTTCACCACTTACGGTGGAAGTATTTCTGAA
GCCATGATATTTTCTCCACAAGCTCTGAAAGTATGTTCAATAGGTGTGCTAAATTAGTGT
TCACATCTTCATTTTTTTCTAACTTTGATGGACTTAACTAAGAGAAGGAATAAATCAATA
TAAATGCATCTTGGCNATCATAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACCATTTTTAGATTACTTCTGTATANATGAAAAGCATGAAAAAGTATTGCAATGAGGAT
ACAGAGGAACTAATGAGTACAGAGTCCAGTGAGACAGACTNTGATATAAGTTAACTTTCA
ACTGATTGAGTTCACTAACATTGGAAGCCATTAAGCAGATATTAATTTTCTTGTGTACAT
TTTGAGCAAGATATTCAACTACAGACTGAAGAAATACATCTCTTTTATAATCTCTTTGAA
TCTGAGACTCTAAGTCTCTATTCATTCTCCAAGTCATGAGATAAACCAGACATACTGGCC
TATATAAAAACATGATTTGTTTTATTTTAATGTAAATATTTAACTTTGGTTTCTTCAAGT
CACTCTTTTTCCTTGAACACAATTCATTATGTAAAGATTAAAAACTCTAACTTTTCAGAG
TATAAACATCACAATAGTAGAAAAGCTTACATGTTTTAGAAATACAAAATTTTTAAGAGG
CAGGTNTACTATTTCTTGTCAAATTAAAATTTCACCACTTACGGTGGAAGTATTTCTGAA
GCCATGATATTTTCTCCACAAGCTCTGAAAGTATGTTCAATAGGTGTGCTAAATTAGTGT
TCACATCTTCATTTTTTTCTAACTTTGATGGACTTAACTAAGAGAAGGAATAAATCAATA
TAAATGCATCTTGGCNATCATAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               202-318, - strand, RNAz p=0.664084
               

               
               437-552, + strand, RNAz p=0.922611

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-318, - strand, RNAz p=0.664084
               

               
               437-552, + strand, RNAz p=0.922611

Similar Transcript(s): 2 entry(ies)

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Similar Transcript(s): 2 entry(ies)

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               491-547, 1367181 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN534240.1|), 
blast E-value=1e-22, identity=100% 
               

               
               491-547, 1394063 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN545026.1|), 
blast E-value=1e-22, identity=100%

Similar Transcript(s): 2 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               491-547, 1367181 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN534240.1|), 
blast E-value=1e-22, identity=100% 
               

               
               491-547, 1394063 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN545026.1|), 
blast E-value=1e-22, identity=100%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of CR749722, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of CR749722, -

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               91-684, gnl|bosTau2|chr7 (54225215-54225807)
               

               
               91-684, gnl|Hg17|chr5 (86711820-86711261)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-684, gnl|bosTau2|chr7 (54225215-54225807)
               

               
               91-684, gnl|Hg17|chr5 (86711820-86711261)

	202-318, - strand, RNAz p=0.664084
	437-552, + strand, RNAz p=0.922611

	491-547, 1367181 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN534240.1\|), blast E-value=1e-22, identity=100%
	491-547, 1394063 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN545026.1\|), blast E-value=1e-22, identity=100%

	91-684, gnl\|bosTau2\|chr7 (54225215-54225807)
	91-684, gnl\|Hg17\|chr5 (86711820-86711261)