mH1-MI-P-H1-afl-a-02-1-UM.s1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAAAAAAAACCCCAAGTGAGGTTTTTAGTGGCGGTTGAAATATTCCCACATGTGGTCAT CAGAAAATAAGCCATTCCTTATACCATCACAGGATAAACATGACTCCTAAGAGGTCAGAG ATCATCCTACTGTGTGTTTTAGAATCCCTCCCCTGCCTTATTGTTTTATAGCAGTGGAAT ACCTCTTGATCACGTCTAAGTGTGACTTTCACTGTGCCTGAGTTCTGAATCATGTCCAGT TGCTTAGCTCATCATTTGGGCTAGGTACTCATTTGAGCATAACTGTACTAATCTTTTTTC CAGATCAGTATAATAAAGGAGTGATGTGCAATAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAAAAAAAACCCCAAGTGAGGTTTTTAGTGGCGGTTGAAATATTCCCACATGTGGTCAT CAGAAAATAAGCCATTCCTTATACCATCACAGGATAAACATGACTCCTAAGAGGTCAGAG ATCATCCTACTGTGTGTTTTAGAATCCCTCCCCTGCCTTATTGTTTTATAGCAGTGGAAT ACCTCTTGATCACGTCTAAGTGTGACTTTCACTGTGCCTGAGTTCTGAATCATGTCCAGT TGCTTAGCTCATCATTTGGGCTAGGTACTCATTTGAGCATAACTGTACTAATCTTTTTTC CAGATCAGTATAATAAAGGAGTGATGTGCAATAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 83-200, + strand, RNAz p=0.538244 | |
| 206-347, - strand, RNAz p=0.992218 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 83-200, + strand, RNAz p=0.538244 | |
| 206-347, - strand, RNAz p=0.992218 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 3-347, gnl|bosTau2|chr2 (73778390-73778038) | |
| 3-347, gnl|canFam2|chr28 (13725260-13724937) | |
| 3-347, gnl|canFam2|chr28 (13724471-13725187) | |
| 3-347, gnl|dasNov1|scaffold_64555 (11014-11350) | |
| 3-347, gnl|dasNov1|scaffold_64555 (11763-11090) | |
| 3-347, gnl|echTel1|scaffold_13938 (441-1069) | |
| 3-347, gnl|echTel1|scaffold_48810 (5014-4695) | |
| 3-347, gnl|Hg17|chr12 (102928388-102928733) | |
| 3-347, gnl|hg17|chr13 (59795057-59795848) | |
| 3-347, gnl|hg17|chr3 (40337657-40338020) | |
| 3-347, gnl|loxAfr1|scaffold_46252 (5674-5298) | |
| 3-347, gnl|loxAfr1|scaffold_46252 (4830-5551) | |
| 3-347, gnl|mm7|chr11 (21635163-21634469) | |
| 3-347, gnl|mm7|chr3 (11020682-11020983) | |
| 3-347, gnl|Mm7|chr7 (24389390-24389094) | |
| 3-347, gnl|monDom2|scaffold_24 (5905588-5905949) | |
| 3-347, gnl|monDom2|scaffold_80 (1900675-1901239) | |
| 3-347, gnl|oryCun1|scaffold_198327 (85990-85678) | |
| 3-347, gnl|oryCun1|scaffold_198327 (85227-85917) | |
| 3-347, gnl|panTro1|chr14_random (27459319-27458534) | |
| 3-347, gnl|panTro1|chr2 (41463623-41463986) | |
| 3-347, gnl|rheMac2|chr17 (39405973-39406827) | |
| 3-347, gnl|rheMac2|chr2 (96218119-96217755) | |
| 3-347, gnl|rn3|chr10 (110484549-110484254) | |
| 3-347, gnl|rn3|chr2 (179574910-179574254) | |
| 3-347, gnl|xenTro1|scaffold_51 (563293-563076) | |
| 4-345, gnl|bosTau2|chr12 (31707182-31706833) | |
| 4-345, gnl|canFam2|chr28 (13725217-13724954) | |
| 4-345, gnl|dasNov1|scaffold_64555 (11060-11333) | |
| 4-345, gnl|echTel1|scaffold_227037 (3061-3322) | |
| 4-345, gnl|Hg17|chr12 (102928384-102928721) | |
| 4-345, gnl|hg17|chr9 (35932332-35932581) | |
| 4-345, gnl|loxAfr1|scaffold_46252 (5581-5315) | |
| 4-345, gnl|Mm7|chr3 (11020990-11020672) | |
| 4-345, gnl|mm7|chr7 (24389151-24389373) | |
| 4-345, gnl|monDom2|scaffold_1 (133941797-133941563) | |
| 4-345, gnl|oryCun1|scaffold_214902 (35458-35708) | |
| 4-345, gnl|panTro1|chr11 (36492343-36492592) | |
| 4-345, gnl|rheMac2|chr15 (41578222-41577973) | |
| 4-345, gnl|rn3|chr2 (179574227-179574454) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-347, gnl|bosTau2|chr2 (73778390-73778038) | |
| 3-347, gnl|canFam2|chr28 (13725260-13724937) | |
| 3-347, gnl|canFam2|chr28 (13724471-13725187) | |
| 3-347, gnl|dasNov1|scaffold_64555 (11014-11350) | |
| 3-347, gnl|dasNov1|scaffold_64555 (11763-11090) | |
| 3-347, gnl|echTel1|scaffold_13938 (441-1069) | |
| 3-347, gnl|echTel1|scaffold_48810 (5014-4695) | |
| 3-347, gnl|Hg17|chr12 (102928388-102928733) | |
| 3-347, gnl|hg17|chr13 (59795057-59795848) | |
| 3-347, gnl|hg17|chr3 (40337657-40338020) | |
| 3-347, gnl|loxAfr1|scaffold_46252 (5674-5298) | |
| 3-347, gnl|loxAfr1|scaffold_46252 (4830-5551) | |
| 3-347, gnl|mm7|chr11 (21635163-21634469) | |
| 3-347, gnl|mm7|chr3 (11020682-11020983) | |
| 3-347, gnl|Mm7|chr7 (24389390-24389094) | |
| 3-347, gnl|monDom2|scaffold_24 (5905588-5905949) | |
| 3-347, gnl|monDom2|scaffold_80 (1900675-1901239) | |
| 3-347, gnl|oryCun1|scaffold_198327 (85990-85678) | |
| 3-347, gnl|oryCun1|scaffold_198327 (85227-85917) | |
| 3-347, gnl|panTro1|chr14_random (27459319-27458534) | |
| 3-347, gnl|panTro1|chr2 (41463623-41463986) | |
| 3-347, gnl|rheMac2|chr17 (39405973-39406827) | |
| 3-347, gnl|rheMac2|chr2 (96218119-96217755) | |
| 3-347, gnl|rn3|chr10 (110484549-110484254) | |
| 3-347, gnl|rn3|chr2 (179574910-179574254) | |
| 3-347, gnl|xenTro1|scaffold_51 (563293-563076) | |
| 4-345, gnl|bosTau2|chr12 (31707182-31706833) | |
| 4-345, gnl|canFam2|chr28 (13725217-13724954) | |
| 4-345, gnl|dasNov1|scaffold_64555 (11060-11333) | |
| 4-345, gnl|echTel1|scaffold_227037 (3061-3322) | |
| 4-345, gnl|Hg17|chr12 (102928384-102928721) | |
| 4-345, gnl|hg17|chr9 (35932332-35932581) | |
| 4-345, gnl|loxAfr1|scaffold_46252 (5581-5315) | |
| 4-345, gnl|Mm7|chr3 (11020990-11020672) | |
| 4-345, gnl|mm7|chr7 (24389151-24389373) | |
| 4-345, gnl|monDom2|scaffold_1 (133941797-133941563) | |
| 4-345, gnl|oryCun1|scaffold_214902 (35458-35708) | |
| 4-345, gnl|panTro1|chr11 (36492343-36492592) | |
| 4-345, gnl|rheMac2|chr15 (41578222-41577973) | |
| 4-345, gnl|rn3|chr2 (179574227-179574454) |