Non-Coding RNA Search

mH1-MI-P-H1-afn-b-09-1-UM.s1

Sequence:


               
               GAAACTTGACGGGCTGTGCATAGTTGATCATTGTGGACAGATACGGATGGATGTTAGTGG
TAGCACCTACATATTTATAAGATGCCATCCACGCCTGCTCATCTTCTACAGTAACCAGGC
CCTTCTTGACACTATTGGCAATAGCTTCCTTGTGACCCAAGTCGTCCACAGAAAGTTCGT
TTCCGTATTTGTACTCNAGGGTGAGCTTCTTCCTCTTGCTCCGCGCTTTCGATTTCTTCT
TCGTTGTCATCCTCTAGGATATTCACAGGGGCAGCAGATTCTCCTGCTTCCATCATGCTT
TTCAAAGCTTCAAGCTGTTTTTTTTCCACCTCAGGTTTCAGCCGTTTATTTTTGATGAGT
ATTTTTCTTTTGAGGTCATTCGGGGATGGCAACGGCCTGCCTGGTTCCAGTGGATGAGAT
TCAAGTGCTTGTTTCAACAGGAGATCTCCGAATAGATCTTCGCAATATTTGGACATCTTG
TACTGTTGATATTTGCTGCAGTGATTTTCAAAGGAGAGAATTACAGGGTATTCCGATGTG
ACAAATGCCGTTTCCTTGATGGCTTGAATAACATCCTTGAAAAGAATGTCTGTACACATG
CTTTCTAGATCGCGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACTTGACGGGCTGTGCATAGTTGATCATTGTGGACAGATACGGATGGATGTTAGTGG
TAGCACCTACATATTTATAAGATGCCATCCACGCCTGCTCATCTTCTACAGTAACCAGGC
CCTTCTTGACACTATTGGCAATAGCTTCCTTGTGACCCAAGTCGTCCACAGAAAGTTCGT
TTCCGTATTTGTACTCNAGGGTGAGCTTCTTCCTCTTGCTCCGCGCTTTCGATTTCTTCT
TCGTTGTCATCCTCTAGGATATTCACAGGGGCAGCAGATTCTCCTGCTTCCATCATGCTT
TTCAAAGCTTCAAGCTGTTTTTTTTCCACCTCAGGTTTCAGCCGTTTATTTTTGATGAGT
ATTTTTCTTTTGAGGTCATTCGGGGATGGCAACGGCCTGCCTGGTTCCAGTGGATGAGAT
TCAAGTGCTTGTTTCAACAGGAGATCTCCGAATAGATCTTCGCAATATTTGGACATCTTG
TACTGTTGATATTTGCTGCAGTGATTTTCAAAGGAGAGAATTACAGGGTATTCCGATGTG
ACAAATGCCGTTTCCTTGATGGCTTGAATAACATCCTTGAAAAGAATGTCTGTACACATG
CTTTCTAGATCGCGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6I6Y7_ORYLA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6I6Y7_ORYLA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               219-324, - strand, RNAz p=0.597152

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               219-324, - strand, RNAz p=0.597152

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-123, gnl|bosTau2|chr13 (378053-377931)
               

               
               1-123, gnl|Hg17|chr20 (9336684-9336562)
               

               
               1-123, gnl|Mm7|chr2 (135707998-135707876)
               


               
               219-324, gnl|bosTau2|chr13 (320732-320627)
               

               
               219-324, gnl|Hg17|chr20 (9324270-9324165)
               

               
               219-324, gnl|Mm7|chr2 (135699595-135699490)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-123, gnl|bosTau2|chr13 (378053-377931)
               

               
               1-123, gnl|Hg17|chr20 (9336684-9336562)
               

               
               1-123, gnl|Mm7|chr2 (135707998-135707876)
               


               
               219-324, gnl|bosTau2|chr13 (320732-320627)
               

               
               219-324, gnl|Hg17|chr20 (9324270-9324165)
               

               
               219-324, gnl|Mm7|chr2 (135699595-135699490)

	1-123, gnl\|bosTau2\|chr13 (378053-377931)
	1-123, gnl\|Hg17\|chr20 (9336684-9336562)
	1-123, gnl\|Mm7\|chr2 (135707998-135707876)

	219-324, gnl\|bosTau2\|chr13 (320732-320627)
	219-324, gnl\|Hg17\|chr20 (9324270-9324165)
	219-324, gnl\|Mm7\|chr2 (135699595-135699490)