Non-Coding RNA Search

mH3-MI-P-H3-adl-d-07-1-UM.s1

Sequence:


               
               CGAGATGGTACCCACTATCCTCTGAGCCCCTTTACCCACTGGGAGGTGGGAGCAGGTAGG
AAGGTAAAGAACCCAGGGAGTACCCAAAATTAGTTTGTCTCCTGCCTTCTTTTAGCCTCA
TTCCTCAAAAATTTCCCCGAATGTGTCCCTGTAAGGGACCATGAAGATTCTAATACCCCC
AAAGAGTTTGGAAGGAAGGAGCCCAAATCAATCTATAACTTACAGGTTTGAGCCTAAAAA
CTCATGGGATTAGTGCATTTGAGGCCATCTCCCTTGATTTGAATGCATGAGTCATATTAT
CCTTTCCCTCCCAAATTCGGGTATAAAACTGACATTCTAGGAGCACGTGCCATGCTTATT
CTATGGCTTCCCCCTCCCCAATCCTGGCTACATGTCTGCCTCAGTCTGAGAAGAGTTGTC
CTGGAATTTCCCACTCTTCTAACGTTGGATGAGAAAGAAGCTGCATGTTTTCAAAGGAGT
GGGGTCTGTCGGGGGTGGGGGGGGGCGTAGTGTTTGTGTTTTGTCTTTATCTGCCCCTCA
CCCACTGTGACCCTCTCCTTTACCTTGCGAATTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGATGGTACCCACTATCCTCTGAGCCCCTTTACCCACTGGGAGGTGGGAGCAGGTAGG
AAGGTAAAGAACCCAGGGAGTACCCAAAATTAGTTTGTCTCCTGCCTTCTTTTAGCCTCA
TTCCTCAAAAATTTCCCCGAATGTGTCCCTGTAAGGGACCATGAAGATTCTAATACCCCC
AAAGAGTTTGGAAGGAAGGAGCCCAAATCAATCTATAACTTACAGGTTTGAGCCTAAAAA
CTCATGGGATTAGTGCATTTGAGGCCATCTCCCTTGATTTGAATGCATGAGTCATATTAT
CCTTTCCCTCCCAAATTCGGGTATAAAACTGACATTCTAGGAGCACGTGCCATGCTTATT
CTATGGCTTCCCCCTCCCCAATCCTGGCTACATGTCTGCCTCAGTCTGAGAAGAGTTGTC
CTGGAATTTCCCACTCTTCTAACGTTGGATGAGAAAGAAGCTGCATGTTTTCAAAGGAGT
GGGGTCTGTCGGGGGTGGGGGGGGGCGTAGTGTTTGTGTTTTGTCTTTATCTGCCCCTCA
CCCACTGTGACCCTCTCCTTTACCTTGCGAATTAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               290-591, - strand, RNAz p=0.972633
               

               
               472-585, + strand, RNAz p=0.933992

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               290-591, - strand, RNAz p=0.972633
               

               
               472-585, + strand, RNAz p=0.933992

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               2-591, gnl|bosTau2|chr16 (44936981-44937564)
               

               
               2-591, gnl|canFam2|chr7 (27097888-27097180)
               

               
               2-591, gnl|dasNov1|scaffold_40235 (920-268)
               

               
               2-591, gnl|echTel1|scaffold_291942 (38036-38784)
               

               
               2-591, gnl|hg17|chr1 (172016819-172017522)
               

               
               2-591, gnl|Hg17|chr1 (172017015-172017577)
               

               
               2-591, gnl|loxAfr1|scaffold_1013 (147140-147858)
               

               
               2-591, gnl|mm7|chr1 (159893015-159892371)
               

               
               2-591, gnl|Mm7|chr1 (159892833-159892339)
               

               
               2-591, gnl|oryCun1|scaffold_206247 (7360-8042)
               

               
               2-591, gnl|panTro1|chr1 (154416257-154416960)
               

               
               2-591, gnl|rheMac2|chr1 (204915253-204915956)
               

               
               2-591, gnl|rn3|chr13 (75365667-75365049)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-591, gnl|bosTau2|chr16 (44936981-44937564)
               

               
               2-591, gnl|canFam2|chr7 (27097888-27097180)
               

               
               2-591, gnl|dasNov1|scaffold_40235 (920-268)
               

               
               2-591, gnl|echTel1|scaffold_291942 (38036-38784)
               

               
               2-591, gnl|hg17|chr1 (172016819-172017522)
               

               
               2-591, gnl|Hg17|chr1 (172017015-172017577)
               

               
               2-591, gnl|loxAfr1|scaffold_1013 (147140-147858)
               

               
               2-591, gnl|mm7|chr1 (159893015-159892371)
               

               
               2-591, gnl|Mm7|chr1 (159892833-159892339)
               

               
               2-591, gnl|oryCun1|scaffold_206247 (7360-8042)
               

               
               2-591, gnl|panTro1|chr1 (154416257-154416960)
               

               
               2-591, gnl|rheMac2|chr1 (204915253-204915956)
               

               
               2-591, gnl|rn3|chr13 (75365667-75365049)

	290-591, - strand, RNAz p=0.972633
	472-585, + strand, RNAz p=0.933992

	2-591, gnl\|bosTau2\|chr16 (44936981-44937564)
	2-591, gnl\|canFam2\|chr7 (27097888-27097180)
	2-591, gnl\|dasNov1\|scaffold_40235 (920-268)
	2-591, gnl\|echTel1\|scaffold_291942 (38036-38784)
	2-591, gnl\|hg17\|chr1 (172016819-172017522)
	2-591, gnl\|Hg17\|chr1 (172017015-172017577)
	2-591, gnl\|loxAfr1\|scaffold_1013 (147140-147858)
	2-591, gnl\|mm7\|chr1 (159893015-159892371)
	2-591, gnl\|Mm7\|chr1 (159892833-159892339)
	2-591, gnl\|oryCun1\|scaffold_206247 (7360-8042)
	2-591, gnl\|panTro1\|chr1 (154416257-154416960)
	2-591, gnl\|rheMac2\|chr1 (204915253-204915956)
	2-591, gnl\|rn3\|chr13 (75365667-75365049)