Non-Coding RNA Search

uFN-UNL-P-FN-an-d-04-0-UNL.s2

Sequence:


               
               TGATGCNTGAAAAGTGTTCAGTCACCCAGATCCGTNCGTCACTCTTATTAGCAGACTCTC
TTATCCAAGTCCCAAATGTCTCTTTAACTTTTAACACTTGTGTTGGATTTCCAATGGATG
TGATCAGGGATTCTGCTTGTGGGGAATGGTGTTCGCTGACTTTCTCATCGGCTTTTCCAA
TCAAGGTATCATCATTGGGTATAGCACATGTCTCACCTGGGCACTGGCCGTTGAACATGT
TTGGCTGCCGAGGGCCTTTGGATCTTCTGCTTCCAGGGGGCCCTGGGGGACCCGGAGGGC
CTGGGGGCCCAGCGGGGCCTGGTGGGCCAGGTGGGCCTTGGTCGCCTTTGGCACCTGCAG
GGAGCACATCATTGGACACGTCTCCCTTGTCCCCCTTGTCCCCCTTCTGCCCTACTGGGC
CCTCGTTTCCAGTCAAGCCCAGCTCACCAGGATCTCCCTTTTCCCCAGGAGTTCCTGTGG
CTCCAGGTGGCCCCATTTTTCCTCTTTTTCCATTTGCTCCTTTTTCGCCTTTTGGGCCCT
GGGGACCAGGCTGTCCATCCGATCCGTTGTGTCCTGGTAACCCACCAATTCAATGGAGGT
CCTGATAGGGCCAGGTGGTTNNNNNNNNNAGNNNCCGCAAGCTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATGCNTGAAAAGTGTTCAGTCACCCAGATCCGTNCGTCACTCTTATTAGCAGACTCTC
TTATCCAAGTCCCAAATGTCTCTTTAACTTTTAACACTTGTGTTGGATTTCCAATGGATG
TGATCAGGGATTCTGCTTGTGGGGAATGGTGTTCGCTGACTTTCTCATCGGCTTTTCCAA
TCAAGGTATCATCATTGGGTATAGCACATGTCTCACCTGGGCACTGGCCGTTGAACATGT
TTGGCTGCCGAGGGCCTTTGGATCTTCTGCTTCCAGGGGGCCCTGGGGGACCCGGAGGGC
CTGGGGGCCCAGCGGGGCCTGGTGGGCCAGGTGGGCCTTGGTCGCCTTTGGCACCTGCAG
GGAGCACATCATTGGACACGTCTCCCTTGTCCCCCTTGTCCCCCTTCTGCCCTACTGGGC
CCTCGTTTCCAGTCAAGCCCAGCTCACCAGGATCTCCCTTTTCCCCAGGAGTTCCTGTGG
CTCCAGGTGGCCCCATTTTTCCTCTTTTTCCATTTGCTCCTTTTTCGCCTTTTGGGCCCT
GGGGACCAGGCTGTCCATCCGATCCGTTGTGTCCTGGTAACCCACCAATTCAATGGAGGT
CCTGATAGGGCCAGGTGGTTNNNNNNNNNAGNNNCCGCAAGCTTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               209-360, + strand, RNAz p=0.999671

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               209-360, + strand, RNAz p=0.999671

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               209-270, AJ695264 KN261 Bos taurus cDNA clone KN261-046_G22, mRNA sequence 
(emb|AJ695264.1|), blast E-value=2e-25, identity=100%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               209-270, AJ695264 KN261 Bos taurus cDNA clone KN261-046_G22, mRNA sequence 
(emb|AJ695264.1|), blast E-value=2e-25, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               209-360, gnl|bosTau2|chr10 (41309455-41309606)
               

               
               209-360, gnl|Hg17|chr15 (49477094-49476953)
               

               
               209-360, gnl|Mm7|chr9 (54363959-54363826)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               209-360, gnl|bosTau2|chr10 (41309455-41309606)
               

               
               209-360, gnl|Hg17|chr15 (49477094-49476953)
               

               
               209-360, gnl|Mm7|chr9 (54363959-54363826)

	209-360, gnl\|bosTau2\|chr10 (41309455-41309606)
	209-360, gnl\|Hg17\|chr15 (49477094-49476953)
	209-360, gnl\|Mm7\|chr9 (54363959-54363826)