Non-Coding RNA Search

uFN-UNL-P-FN-bb-f-10-0-UNL.s1

Sequence:


               
               TTCCCAGCNCCCCTCGNAANCTTGTTCTCCGGGGGGCCTGCGNCCCCATTNCCCCTTGTG
CCCCGGGGGNCTCTCCGTCCCTGCGGGCCCACCGGCCCCCGCTGGACGNCAATCCTCTGG
GGGATCCCTACAATCCCTGGGCCCCCACAGCACCGGGGGGACCTGGGAGTCCTCGGTCTC
CTTTGGGTCCCTTGGGGCCTCGGTCCCCGACACTCCCGGTGGCACCCGTGTTTCCCATGA
ATCCTTGCTCTCCTCTGGGCCCTTTTTCTCCCGGGAGCCCGAACACGCCGGGTCGGCCCT
GGGGCCCTGGGTCCCCGACCCAGCCCTTGCCCCCTGGGTTTCCGGGGATGCCTGGCAGCC
CCTCATCTCCTTTGCTTCCGGGAAGAGCAGCAGGCCCTGGCGGCCCCGGGGGGCCTCGGT
AACCTTCCGGGCCGAATATCCCGGGAGCCCCTGTGTCACCAGGTAACCCAGAGACGTTGG
AAGGGGGGGTGATGCCTGGAAAGCCCTGAAGTCCGGGATTCCCGACAGGGCCTCGTTCCC
CTGGGGCTCCGCGCTCCCCTTTCTGTCCTGGGGCTCCGGCAGGGCCTGGAAGGGTGTTGG
CCTCTCCTGGGTCACCCCTGTCCCCGGCAGGCCCCGGGANNCCNGGGTCTCCGTGGACAT
CTGCACCTGGGGATCCTGTTCTGATGTTGGAGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCAGCNCCCCTCGNAANCTTGTTCTCCGGGGGGCCTGCGNCCCCATTNCCCCTTGTG
CCCCGGGGGNCTCTCCGTCCCTGCGGGCCCACCGGCCCCCGCTGGACGNCAATCCTCTGG
GGGATCCCTACAATCCCTGGGCCCCCACAGCACCGGGGGGACCTGGGAGTCCTCGGTCTC
CTTTGGGTCCCTTGGGGCCTCGGTCCCCGACACTCCCGGTGGCACCCGTGTTTCCCATGA
ATCCTTGCTCTCCTCTGGGCCCTTTTTCTCCCGGGAGCCCGAACACGCCGGGTCGGCCCT
GGGGCCCTGGGTCCCCGACCCAGCCCTTGCCCCCTGGGTTTCCGGGGATGCCTGGCAGCC
CCTCATCTCCTTTGCTTCCGGGAAGAGCAGCAGGCCCTGGCGGCCCCGGGGGGCCTCGGT
AACCTTCCGGGCCGAATATCCCGGGAGCCCCTGTGTCACCAGGTAACCCAGAGACGTTGG
AAGGGGGGGTGATGCCTGGAAAGCCCTGAAGTCCGGGATTCCCGACAGGGCCTCGTTCCC
CTGGGGCTCCGCGCTCCCCTTTCTGTCCTGGGGCTCCGGCAGGGCCTGGAAGGGTGTTGG
CCTCTCCTGGGTCACCCCTGTCCCCGGCAGGCCCCGGGANNCCNGGGTCTCCGTGGACAT
CTGCACCTGGGGATCCTGTTCTGATGTTGGAGCGGCCGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               261-419, - strand, RNAz p=0.959949

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               261-419, - strand, RNAz p=0.959949

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               273-361, + strand, RNAmicro p=0.939783

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               273-361, + strand, RNAmicro p=0.939783

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               261-428, gnl|bosTau2|chr12 (46233833-46234000)
               

               
               261-428, gnl|Hg17|chr13 (109953631-109953464)
               

               
               261-428, gnl|Mm7|chr8 (11411244-11411079)
               


               
               537-669, gnl|bosTau2|chr12 (46236564-46236696)
               

               
               537-669, gnl|Hg17|chr13 (109945819-109945687)
               

               
               537-669, gnl|Mm7|chr8 (11409362-11409230)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               261-428, gnl|bosTau2|chr12 (46233833-46234000)
               

               
               261-428, gnl|Hg17|chr13 (109953631-109953464)
               

               
               261-428, gnl|Mm7|chr8 (11411244-11411079)
               


               
               537-669, gnl|bosTau2|chr12 (46236564-46236696)
               

               
               537-669, gnl|Hg17|chr13 (109945819-109945687)
               

               
               537-669, gnl|Mm7|chr8 (11409362-11409230)

	261-428, gnl\|bosTau2\|chr12 (46233833-46234000)
	261-428, gnl\|Hg17\|chr13 (109953631-109953464)
	261-428, gnl\|Mm7\|chr8 (11411244-11411079)

	537-669, gnl\|bosTau2\|chr12 (46236564-46236696)
	537-669, gnl\|Hg17\|chr13 (109945819-109945687)
	537-669, gnl\|Mm7\|chr8 (11409362-11409230)