Non-Coding RNA Search

uFN-UNL-P-FN-bh-d-08-0-UNL.s2

Sequence:


               
               TGCCCATCGCTGTNNTGTTGANGGCGCCACCCTTATTGGGACAGAGGACGCAANCCACAG
GCCGGGAAGGAGACNCAAGCAGCAGCGCACAACCACTGGCCCTCAGGGATGTAGGGACAC
CATAGCACTCCTGGTGTACAGCCAGGTNGCAGATGTCACAGAAGAGAATGACGTTGCTGT
TGTGGCATTCGTCATCCAGGCACACGCAGCAGAAAGCATCTTCGTCAATGAGCGACTGCT
GGGCTCCATTGCTACGACTCTCCAAGTACGACTCCTTCTCAAGCCGGTCCACCAGCAGCT
CAAAGGTGTCTGCTGACACCAAACCGTGCCCATCTACCCGCCGCTTCTCGTTCACCATGT
CCAGCCAGGCCAGGTCCTCCTCATCCATGTCGTACTCAACCTCTGCATCCAGGTCTTCAG
GCGGCTTCTCGATGTAGCGATAGTAAGCAGCAGGCAGGGGGGGAGCCTCTGGCTGACTGC
CTGAGTCCACCACACGGAAGCTGGGTTGCGGGAGGTGAAAAGAAGTGCCAGATGCATACT
TGGAGCAGGACTCCTTCTTCTTGCCCTTGGATGAGGGTNTTTTGGACTTACCAGGGAACT
GAGGCTGCTCACTGTTTTCCTTGTTACTGTTGCATTCAGTGATATCCTGGGCGGTCAACT
CATCCTCTGTGATGATCTTGAGTGGGTCATAGATGCTAATACGGTGCAGACGTCCATCGA
TGTCCACCTCGACAATCCGCTGGGCCTGGGCATATAGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCCATCGCTGTNNTGTTGANGGCGCCACCCTTATTGGGACAGAGGACGCAANCCACAG
GCCGGGAAGGAGACNCAAGCAGCAGCGCACAACCACTGGCCCTCAGGGATGTAGGGACAC
CATAGCACTCCTGGTGTACAGCCAGGTNGCAGATGTCACAGAAGAGAATGACGTTGCTGT
TGTGGCATTCGTCATCCAGGCACACGCAGCAGAAAGCATCTTCGTCAATGAGCGACTGCT
GGGCTCCATTGCTACGACTCTCCAAGTACGACTCCTTCTCAAGCCGGTCCACCAGCAGCT
CAAAGGTGTCTGCTGACACCAAACCGTGCCCATCTACCCGCCGCTTCTCGTTCACCATGT
CCAGCCAGGCCAGGTCCTCCTCATCCATGTCGTACTCAACCTCTGCATCCAGGTCTTCAG
GCGGCTTCTCGATGTAGCGATAGTAAGCAGCAGGCAGGGGGGGAGCCTCTGGCTGACTGC
CTGAGTCCACCACACGGAAGCTGGGTTGCGGGAGGTGAAAAGAAGTGCCAGATGCATACT
TGGAGCAGGACTCCTTCTTCTTGCCCTTGGATGAGGGTNTTTTGGACTTACCAGGGAACT
GAGGCTGCTCACTGTTTTCCTTGTTACTGTTGCATTCAGTGATATCCTGGGCGGTCAACT
CATCCTCTGTGATGATCTTGAGTGGGTCATAGATGCTAATACGGTGCAGACGTCCATCGA
TGTCCACCTCGACAATCCGCTGGGCCTGGGCATATAGCGGCCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BU83_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BU83_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               118-237, - strand, RNAz p=0.663601
               

               
               557-676, + strand, RNAz p=0.977941

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-237, - strand, RNAz p=0.663601
               

               
               557-676, + strand, RNAz p=0.977941

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               142-277, - strand, RNAmicro p=0.99733

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               142-277, - strand, RNAmicro p=0.99733

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-754, gnl|bosTau2|chr23 (8535127-8534370)
               

               
               1-754, gnl|Hg17|chr6 (36276934-36276177)
               

               
               1-754, gnl|Mm7|chr17 (26993007-26992250)
               


               
               2-457, gnl|bosTau2|chr22 (11890243-11889785)
               

               
               2-457, gnl|Hg17|chr3 (9756122-9755664)
               

               
               2-457, gnl|Mm7|chr6 (113475958-113475500)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-754, gnl|bosTau2|chr23 (8535127-8534370)
               

               
               1-754, gnl|Hg17|chr6 (36276934-36276177)
               

               
               1-754, gnl|Mm7|chr17 (26993007-26992250)
               


               
               2-457, gnl|bosTau2|chr22 (11890243-11889785)
               

               
               2-457, gnl|Hg17|chr3 (9756122-9755664)
               

               
               2-457, gnl|Mm7|chr6 (113475958-113475500)

	118-237, - strand, RNAz p=0.663601
	557-676, + strand, RNAz p=0.977941

	1-754, gnl\|bosTau2\|chr23 (8535127-8534370)
	1-754, gnl\|Hg17\|chr6 (36276934-36276177)
	1-754, gnl\|Mm7\|chr17 (26993007-26992250)

	2-457, gnl\|bosTau2\|chr22 (11890243-11889785)
	2-457, gnl\|Hg17\|chr3 (9756122-9755664)
	2-457, gnl\|Mm7\|chr6 (113475958-113475500)