Non-Coding RNA Search

uFN-UNL-P-FN-bl-g-10-0-UNL.s1

Sequence:


               
               ATAGGCTGCTTTGTCAGGGTCCATCTCCCTTGNCCCGTTCACAGCCCAGGCGTGCCGGGG
GTCTCACTCTGCCNACTGCAGGTGAGGAGGCCGGGCGAGTTCACCAGCTTGCTCTGGGAG
CCAAGCGGCGACGCCGGAAAGCCCGAGCCGCCTGAGGTGGTGCCTCCTCCCAGGTGGTGC
GGGGGCGGCAGGCGGGCTGACAGCCGGCAGTTTGCGTGGGCGGTGCCAGCTGATGTCTAT
TCCCAGCCCCCGGGAGGAAGGGGGAAGCCGTTTATATTCCGAAGGAGGAAGGGGCCCCAG
CTGTCACCTCTCTGACTGGGAGGGCTGGGGGCNGCAGGGCACAGGGCAGAGGGGAGGGCA
CAGGTGGTCTCCTCTCGCTTAGCCAGTCTGACTGCAGTACCGGGAGGCGGTCACCAGGAG
GAGCACTTCTTCCCGGCTGGCCGGACCCCCCCCCGCCCCCCGCCCGCCCTCCGCTTCTCC
CTCCCCTCATCACCACCTGCCCTCACATCCTGGGGGAGCAGCTGGACAATCCTTAGATCT
TCGTGCCCGGGCACCCTGCCTCCAGCTGGGAGCTTTGTGGCTGCTGACTGCCTGTGCCTC
CTCTCGCTCATGTGTTTCCTCCCCCCCCACCNTCTATCCCCCTATCCCTACGCCCCACCC
CTCCCCCAGCCCCCCATCTGGGACCTTAGCTGGGCTGCTCAGCAGAGAGGCACAGGCCTT
GGGGAAGACGCAAATGGCTGCCCTTTTGCCCTTGTGCCCTAGCTAGAAAAGCTGCTAGTT
GTCAGGTGGTTTGTCTTTTTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGGCTGCTTTGTCAGGGTCCATCTCCCTTGNCCCGTTCACAGCCCAGGCGTGCCGGGG
GTCTCACTCTGCCNACTGCAGGTGAGGAGGCCGGGCGAGTTCACCAGCTTGCTCTGGGAG
CCAAGCGGCGACGCCGGAAAGCCCGAGCCGCCTGAGGTGGTGCCTCCTCCCAGGTGGTGC
GGGGGCGGCAGGCGGGCTGACAGCCGGCAGTTTGCGTGGGCGGTGCCAGCTGATGTCTAT
TCCCAGCCCCCGGGAGGAAGGGGGAAGCCGTTTATATTCCGAAGGAGGAAGGGGCCCCAG
CTGTCACCTCTCTGACTGGGAGGGCTGGGGGCNGCAGGGCACAGGGCAGAGGGGAGGGCA
CAGGTGGTCTCCTCTCGCTTAGCCAGTCTGACTGCAGTACCGGGAGGCGGTCACCAGGAG
GAGCACTTCTTCCCGGCTGGCCGGACCCCCCCCCGCCCCCCGCCCGCCCTCCGCTTCTCC
CTCCCCTCATCACCACCTGCCCTCACATCCTGGGGGAGCAGCTGGACAATCCTTAGATCT
TCGTGCCCGGGCACCCTGCCTCCAGCTGGGAGCTTTGTGGCTGCTGACTGCCTGTGCCTC
CTCTCGCTCATGTGTTTCCTCCCCCCCCACCNTCTATCCCCCTATCCCTACGCCCCACCC
CTCCCCCAGCCCCCCATCTGGGACCTTAGCTGGGCTGCTCAGCAGAGAGGCACAGGCCTT
GGGGAAGACGCAAATGGCTGCCCTTTTGCCCTTGTGCCCTAGCTAGAAAAGCTGCTAGTT
GTCAGGTGGTTTGTCTTTTTAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               58-240, - strand, RNAz p=0.999393
               

               
               392-631, - strand, RNAz p=0.999886
               

               
               419-721, - strand, RNAz p=0.983424

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               58-240, - strand, RNAz p=0.999393
               

               
               392-631, - strand, RNAz p=0.999886
               

               
               419-721, - strand, RNAz p=0.983424

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               538-626, + strand, RNAmicro p=0.999996

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               538-626, + strand, RNAmicro p=0.999996

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               488-571, DA170365 BRAMY2 Homo sapiens cDNA clone BRAMY2032382 5', mRNA 
(dbj|DA170365.1|), blast E-value=0.00000000000002, identity=88.1% 
               

               
               488-571, DA910612 SKNSH2 Homo sapiens cDNA clone SKNSH2003633 5', mRNA 
(dbj|DA910612.1|), blast E-value=0.00000000000002, identity=88.1% 
               

               
               488-571, DB299980 BRACE3 Homo sapiens cDNA clone BRACE3030538 3', mRNA 
(dbj|DB299980.1|), blast E-value=0.00000000000002, identity=88.1% 
               

               
               488-571, DB324882 NT2RP7 Homo sapiens cDNA clone NT2RP7008161 3', mRNA 
(dbj|DB324882.1|), blast E-value=0.00000000000002, identity=88.1% 
               

               
               488-571, DB372021 OVARC1 Homo sapiens cDNA clone OVARC1001804 3', mRNA 
(dbj|DB372021.1|), blast E-value=0.00000000000002, identity=88.1% 
               

               
               488-571, DB544461 RIKEN full-length enriched human cDNA library, hippocampus 
(dbj|DB544461.1|), blast E-value=0.00000000000002, identity=88.1%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               488-571, DA170365 BRAMY2 Homo sapiens cDNA clone BRAMY2032382 5', mRNA 
(dbj|DA170365.1|), blast E-value=0.00000000000002, identity=88.1% 
               

               
               488-571, DA910612 SKNSH2 Homo sapiens cDNA clone SKNSH2003633 5', mRNA 
(dbj|DA910612.1|), blast E-value=0.00000000000002, identity=88.1% 
               

               
               488-571, DB299980 BRACE3 Homo sapiens cDNA clone BRACE3030538 3', mRNA 
(dbj|DB299980.1|), blast E-value=0.00000000000002, identity=88.1% 
               

               
               488-571, DB324882 NT2RP7 Homo sapiens cDNA clone NT2RP7008161 3', mRNA 
(dbj|DB324882.1|), blast E-value=0.00000000000002, identity=88.1% 
               

               
               488-571, DB372021 OVARC1 Homo sapiens cDNA clone OVARC1001804 3', mRNA 
(dbj|DB372021.1|), blast E-value=0.00000000000002, identity=88.1% 
               

               
               488-571, DB544461 RIKEN full-length enriched human cDNA library, hippocampus 
(dbj|DB544461.1|), blast E-value=0.00000000000002, identity=88.1%

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               19-808, gnl|bosTau2|chr3 (25964239-25963465)
               

               
               19-808, gnl|canFam2|chr6 (45421310-45420673)
               

               
               19-808, gnl|dasNov1|scaffold_61047 (5805-5107)
               

               
               19-808, gnl|echTel1|scaffold_277841 (9462-10148)
               

               
               19-808, gnl|hg17|chr1 (109752580-109753245)
               

               
               19-808, gnl|Hg17|chr1 (109752742-109753532)
               

               
               19-808, gnl|mm7|chr3 (108016054-108015421)
               

               
               19-808, gnl|Mm7|chr3 (108015880-108015143)
               

               
               19-808, gnl|monDom2|scaffold_0 (7150968-7150200)
               

               
               19-808, gnl|oryCun1|scaffold_208853 (34778-35459)
               

               
               19-808, gnl|panTro1|chr1 (108682835-108683501)
               

               
               19-808, gnl|rheMac2|chr1 (112557062-112557726)
               

               
               19-808, gnl|rn3|chr2 (203725775-203725127)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-808, gnl|bosTau2|chr3 (25964239-25963465)
               

               
               19-808, gnl|canFam2|chr6 (45421310-45420673)
               

               
               19-808, gnl|dasNov1|scaffold_61047 (5805-5107)
               

               
               19-808, gnl|echTel1|scaffold_277841 (9462-10148)
               

               
               19-808, gnl|hg17|chr1 (109752580-109753245)
               

               
               19-808, gnl|Hg17|chr1 (109752742-109753532)
               

               
               19-808, gnl|mm7|chr3 (108016054-108015421)
               

               
               19-808, gnl|Mm7|chr3 (108015880-108015143)
               

               
               19-808, gnl|monDom2|scaffold_0 (7150968-7150200)
               

               
               19-808, gnl|oryCun1|scaffold_208853 (34778-35459)
               

               
               19-808, gnl|panTro1|chr1 (108682835-108683501)
               

               
               19-808, gnl|rheMac2|chr1 (112557062-112557726)
               

               
               19-808, gnl|rn3|chr2 (203725775-203725127)

	58-240, - strand, RNAz p=0.999393
	392-631, - strand, RNAz p=0.999886
	419-721, - strand, RNAz p=0.983424

	488-571, DA170365 BRAMY2 Homo sapiens cDNA clone BRAMY2032382 5', mRNA (dbj\|DA170365.1\|), blast E-value=0.00000000000002, identity=88.1%
	488-571, DA910612 SKNSH2 Homo sapiens cDNA clone SKNSH2003633 5', mRNA (dbj\|DA910612.1\|), blast E-value=0.00000000000002, identity=88.1%
	488-571, DB299980 BRACE3 Homo sapiens cDNA clone BRACE3030538 3', mRNA (dbj\|DB299980.1\|), blast E-value=0.00000000000002, identity=88.1%
	488-571, DB324882 NT2RP7 Homo sapiens cDNA clone NT2RP7008161 3', mRNA (dbj\|DB324882.1\|), blast E-value=0.00000000000002, identity=88.1%
	488-571, DB372021 OVARC1 Homo sapiens cDNA clone OVARC1001804 3', mRNA (dbj\|DB372021.1\|), blast E-value=0.00000000000002, identity=88.1%
	488-571, DB544461 RIKEN full-length enriched human cDNA library, hippocampus (dbj\|DB544461.1\|), blast E-value=0.00000000000002, identity=88.1%

	19-808, gnl\|bosTau2\|chr3 (25964239-25963465)
	19-808, gnl\|canFam2\|chr6 (45421310-45420673)
	19-808, gnl\|dasNov1\|scaffold_61047 (5805-5107)
	19-808, gnl\|echTel1\|scaffold_277841 (9462-10148)
	19-808, gnl\|hg17\|chr1 (109752580-109753245)
	19-808, gnl\|Hg17\|chr1 (109752742-109753532)
	19-808, gnl\|mm7\|chr3 (108016054-108015421)
	19-808, gnl\|Mm7\|chr3 (108015880-108015143)
	19-808, gnl\|monDom2\|scaffold_0 (7150968-7150200)
	19-808, gnl\|oryCun1\|scaffold_208853 (34778-35459)
	19-808, gnl\|panTro1\|chr1 (108682835-108683501)
	19-808, gnl\|rheMac2\|chr1 (112557062-112557726)
	19-808, gnl\|rn3\|chr2 (203725775-203725127)