Non-Coding RNA Search

uFN-UNL-P-FN-br-f-09-0-UNL.s1

Sequence:


               
               ACAGCACAAGTTANAAAGGCTAAAACGGTTGCTACCTGGGTGCGGGACTGGGAGGATGAG
TGTGGCTATTTTTCAATAAAATCCGGCCCAGCCCTCAGATTTCTTAAAGCATTTTCACAT
GCAATATCTCATCAGCTTCTTCAACAAACTTCCTTGCCAAGACAGGACACGGAGGCCCAG
AGAGGGGCAGTGACCTTTCAAGGTCACACAGCAGGTGAAGCCAGACCTCCCTGCGCTTGT
TCCTTGTCCCCTTGTCCCCTACCCACACCCCTACACCGAGCTGCAGGAAACCGGCTGAGA
GCCAGCAAGAGCGCCGGGTGACTCGCCCCCGCCCCCGAGTCCCAGACCACGTCTCGGAAC
TACGGCAGCAGTAGCGTGGGCGCGGCCGAACTCAGCCAGCCACTGCCGGTGCGCCGCCCG
CTGCGGCCACACTGTCCTTGGGAGGACGCGCGGGCAGCCGCGAACAGTGCGGCAGCGCCC
CCTGCCGGATTCCGGGCACTTCGCTCCAACCAGCCCCGCGCTATACTCGGGAAAGGGGAT
GGGACCCCCCACCACACCCCCTACTACTCCCACACGCGCTGAGCCAACTCTGGACTCGCC
GTGGCCGGGGGATGCCGTAATGAAAGAGGCACCCTCTCTAGAATCACAGGATGCATCGGC
CGCCTGGACGCCCTCCTTGGAAGGACACTGGGACTAGAGAAGGTGATGACCTGCCTAACG
TCGCATAGCACGNCCGTGGTAAAACTGGGACTAGGACCAAGACCTCCTGTGGAATCTTCN
CAGGGAGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGCACAAGTTANAAAGGCTAAAACGGTTGCTACCTGGGTGCGGGACTGGGAGGATGAG
TGTGGCTATTTTTCAATAAAATCCGGCCCAGCCCTCAGATTTCTTAAAGCATTTTCACAT
GCAATATCTCATCAGCTTCTTCAACAAACTTCCTTGCCAAGACAGGACACGGAGGCCCAG
AGAGGGGCAGTGACCTTTCAAGGTCACACAGCAGGTGAAGCCAGACCTCCCTGCGCTTGT
TCCTTGTCCCCTTGTCCCCTACCCACACCCCTACACCGAGCTGCAGGAAACCGGCTGAGA
GCCAGCAAGAGCGCCGGGTGACTCGCCCCCGCCCCCGAGTCCCAGACCACGTCTCGGAAC
TACGGCAGCAGTAGCGTGGGCGCGGCCGAACTCAGCCAGCCACTGCCGGTGCGCCGCCCG
CTGCGGCCACACTGTCCTTGGGAGGACGCGCGGGCAGCCGCGAACAGTGCGGCAGCGCCC
CCTGCCGGATTCCGGGCACTTCGCTCCAACCAGCCCCGCGCTATACTCGGGAAAGGGGAT
GGGACCCCCCACCACACCCCCTACTACTCCCACACGCGCTGAGCCAACTCTGGACTCGCC
GTGGCCGGGGGATGCCGTAATGAAAGAGGCACCCTCTCTAGAATCACAGGATGCATCGGC
CGCCTGGACGCCCTCCTTGGAAGGACACTGGGACTAGAGAAGGTGATGACCTGCCTAACG
TCGCATAGCACGNCCGTGGTAAAACTGGGACTAGGACCAAGACCTCCTGTGGAATCTTCN
CAGGGAGCGGCCGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               306-415, - strand, RNAz p=0.771385

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               306-415, - strand, RNAz p=0.771385

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               316-444, - strand, RNAmicro p=0.969722

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               316-444, - strand, RNAmicro p=0.969722

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-786, gnl|bosTau2|chr3 (65871735-65872529)
               

               
               6-786, gnl|Hg17|chr1 (50510334-50511186)
               

               
               6-786, gnl|Mm7|chr4 (109428019-109427223)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-786, gnl|bosTau2|chr3 (65871735-65872529)
               

               
               6-786, gnl|Hg17|chr1 (50510334-50511186)
               

               
               6-786, gnl|Mm7|chr4 (109428019-109427223)

	6-786, gnl\|bosTau2\|chr3 (65871735-65872529)
	6-786, gnl\|Hg17\|chr1 (50510334-50511186)
	6-786, gnl\|Mm7\|chr4 (109428019-109427223)