Non-Coding RNA Search

uFN-UNL-P-FN-cg-c-03-0-UNL.s1

Sequence:


               
               TTGTATGTCAACTGAANAACCTTNTGGGCGGTGAGGCGCAGAAATGCCCACATTCNTNAC
GGGAAACAAAGCCCCCAAAGGGNAAGATGGCACCTTCTGTNTTGGCTGGGGCTAGGGGCC
NAGGCTGGATGAGAGCCGAGGGCTCAGGCCCCAGCGCTGCCCCCGGAGCTGCCCTGGAGT
CACCCCAGCCTTGCCTCAGAGTCCGCAGGCTCTGCCAGGCCAGCAGCGCCAGGTGGGCAG
GTTGGGAGCCTGGGGCGACTAGGCAGGGCAGGGAGGGCAGAGGCAGGTGCGGGGGAGGGT
GAGTCACAGGCTCCCCTACAGGCAGCCAGGTGCACAGAAGGCTCTNGCAGGCGCTCGAGG
GGACAACCTGGAGGCCAGGCAGGTGGAGCTGGGTGGAAGGCCCCCGAGTGGGCAGCATCA
GTTGCAGCTGGCAGCTATTTCTGGGTCCCTGGAGGGTGGGGCTGGTGCTGCCTGGGAGTG
GACACCTGTCAGAGTCACGCAGGCCTTGGGGTTGGGGTGGGNCTGCCCATGGGCATGGCA
GGTGCGCATATGGCCACGGGGNAGGGGNATGTGTGTGACCCAGACAGAGAAACCAGCTCG
CTGTGGGTGAAGCCACAGACGGGACTGGAGANACTGACACTTGTCTTCTAATCTGAGGCA
CTTCCATCACACTAGGGTCCCTTCTATNACTCACATGTGAAAGCTGAGGCCTGGGGACGG
GAAGGCTGTGCCTGAAGTCGGGTGGCGGCAGAGCTGGGTGAGAGCCCAGTGGGCATCAAG
CGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTATGTCAACTGAANAACCTTNTGGGCGGTGAGGCGCAGAAATGCCCACATTCNTNAC
GGGAAACAAAGCCCCCAAAGGGNAAGATGGCACCTTCTGTNTTGGCTGGGGCTAGGGGCC
NAGGCTGGATGAGAGCCGAGGGCTCAGGCCCCAGCGCTGCCCCCGGAGCTGCCCTGGAGT
CACCCCAGCCTTGCCTCAGAGTCCGCAGGCTCTGCCAGGCCAGCAGCGCCAGGTGGGCAG
GTTGGGAGCCTGGGGCGACTAGGCAGGGCAGGGAGGGCAGAGGCAGGTGCGGGGGAGGGT
GAGTCACAGGCTCCCCTACAGGCAGCCAGGTGCACAGAAGGCTCTNGCAGGCGCTCGAGG
GGACAACCTGGAGGCCAGGCAGGTGGAGCTGGGTGGAAGGCCCCCGAGTGGGCAGCATCA
GTTGCAGCTGGCAGCTATTTCTGGGTCCCTGGAGGGTGGGGCTGGTGCTGCCTGGGAGTG
GACACCTGTCAGAGTCACGCAGGCCTTGGGGTTGGGGTGGGNCTGCCCATGGGCATGGCA
GGTGCGCATATGGCCACGGGGNAGGGGNATGTGTGTGACCCAGACAGAGAAACCAGCTCG
CTGTGGGTGAAGCCACAGACGGGACTGGAGANACTGACACTTGTCTTCTAATCTGAGGCA
CTTCCATCACACTAGGGTCCCTTCTATNACTCACATGTGAAAGCTGAGGCCTGGGGACGG
GAAGGCTGTGCCTGAAGTCGGGTGGCGGCAGAGCTGGGTGAGAGCCCAGTGGGCATCAAG
CGGCCGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               126-437, - strand, RNAz p=0.998149
               

               
               478-592, - strand, RNAz p=0.818842

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               126-437, - strand, RNAz p=0.998149
               

               
               478-592, - strand, RNAz p=0.818842

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               203-331, + strand, RNAmicro p=0.999973
               

               
               174-305, - strand, RNAmicro p=0.999418
               

               
               320-461, - strand, RNAmicro p=0.971216

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               203-331, + strand, RNAmicro p=0.999973
               

               
               174-305, - strand, RNAmicro p=0.999418
               

               
               320-461, - strand, RNAmicro p=0.971216

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               110-681, gnl|bosTau2|chr13 (43298567-43297998)
               

               
               110-681, gnl|Hg17|chr20 (29618763-29618162)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-681, gnl|bosTau2|chr13 (43298567-43297998)
               

               
               110-681, gnl|Hg17|chr20 (29618763-29618162)

	126-437, - strand, RNAz p=0.998149
	478-592, - strand, RNAz p=0.818842

	203-331, + strand, RNAmicro p=0.999973
	174-305, - strand, RNAmicro p=0.999418
	320-461, - strand, RNAmicro p=0.971216

	110-681, gnl\|bosTau2\|chr13 (43298567-43297998)
	110-681, gnl\|Hg17\|chr20 (29618763-29618162)