Non-Coding RNA Search

uFN-UNL-P-FN-cg-g-02-0-UNL.s1

Sequence:


               
               ATCCTTTTCAGGGCACACGAATGATCGCTTAACTGGTTCACAGTTTCAAATCCCTAGTGT
CCAACGAAAGGCATTAGAGTTCTCGAGAAAGAAATATGTACAACCGCGAAAGGGACCATC
CAGGGTATCGTCTACGATATTCCAGTTAGCTGCTATCAATGCTTTGCCTATGGCTGTTAT
TTGTTCAATGGCAGAATAAGGCGACGCTTGTAACAACCTGCAATTCAGTCTCCTNACACA
CACACACACATACACAGGCGCGCACGCNGTGCACGCACACACACCCACACATCAGGCACG
TGACCCCAAAAATACAAAAGCATAGGGGGCTTTGGTGGGAGGGAAGGGGCTTCTAAATAA
ATTAACATCTTCACAGATAAAACACTTGGACTGCAGAAATNTCACTGAGGTTTCGGAGAA
GGCCGTGCAGAGGTTGGCATGCTAGAAGGTAACTTTTTGGAGGCCGTCTCAGCAGACTGC
CTGCAACTGGGAGATGCGGGCGCTCCGGGATCTAGCTGGGAAGACTTGGCTTTGCGGGTG
GACAGCAGCGAGTGTTTCGCAGAAGCGGGGCCCCTGGGGGCGGGCTGCTCTTGCGCGCCC
GCGGTGCTTCGGCTGCGGGGAGCCTCTGTCGGCCTTATCCTCGGGCGCCGCGCCCCGGCC
GCCCGCCTTCTTGGAGAGCAGGCTTGTCTTGCCAAGGTCCGTGGAGCGCCGGGTCTCCTT
CTGCCGCAAGGCTGACTTGAAGAAGGACAGCCCCTTGTCCTCCGACTTGCTGTCCCTCTT
CAGGCCAGCCTTCNCGTCACGCTGGGCGAGCGCAGGCTGGCCATGGACGAGTGCGCACGA
GCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCTTTTCAGGGCACACGAATGATCGCTTAACTGGTTCACAGTTTCAAATCCCTAGTGT
CCAACGAAAGGCATTAGAGTTCTCGAGAAAGAAATATGTACAACCGCGAAAGGGACCATC
CAGGGTATCGTCTACGATATTCCAGTTAGCTGCTATCAATGCTTTGCCTATGGCTGTTAT
TTGTTCAATGGCAGAATAAGGCGACGCTTGTAACAACCTGCAATTCAGTCTCCTNACACA
CACACACACATACACAGGCGCGCACGCNGTGCACGCACACACACCCACACATCAGGCACG
TGACCCCAAAAATACAAAAGCATAGGGGGCTTTGGTGGGAGGGAAGGGGCTTCTAAATAA
ATTAACATCTTCACAGATAAAACACTTGGACTGCAGAAATNTCACTGAGGTTTCGGAGAA
GGCCGTGCAGAGGTTGGCATGCTAGAAGGTAACTTTTTGGAGGCCGTCTCAGCAGACTGC
CTGCAACTGGGAGATGCGGGCGCTCCGGGATCTAGCTGGGAAGACTTGGCTTTGCGGGTG
GACAGCAGCGAGTGTTTCGCAGAAGCGGGGCCCCTGGGGGCGGGCTGCTCTTGCGCGCCC
GCGGTGCTTCGGCTGCGGGGAGCCTCTGTCGGCCTTATCCTCGGGCGCCGCGCCCCGGCC
GCCCGCCTTCTTGGAGAGCAGGCTTGTCTTGCCAAGGTCCGTGGAGCGCCGGGTCTCCTT
CTGCCGCAAGGCTGACTTGAAGAAGGACAGCCCCTTGTCCTCCGACTTGCTGTCCCTCTT
CAGGCCAGCCTTCNCGTCACGCTGGGCGAGCGCAGGCTGGCCATGGACGAGTGCGCACGA
GCGGCCGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               659-842, + strand, RNAz p=0.996801
               

               
               692-808, - strand, RNAz p=0.974218

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               659-842, + strand, RNAz p=0.996801
               

               
               692-808, - strand, RNAz p=0.974218

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               709-811, + strand, RNAmicro p=0.997841
               

               
               724-807, - strand, RNAmicro p=0.996813

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               709-811, + strand, RNAmicro p=0.997841
               

               
               724-807, - strand, RNAmicro p=0.996813

Similar Transcript(s): 12 entry(ies)

More info

Similar Transcript(s): 12 entry(ies)

Help | Less info


               
               685-782, DB074348 TESTI4 Homo sapiens cDNA clone TESTI4017931 5', mRNA 
(dbj|DB074348.1|), blast E-value=4e-30, identity=92.86% 
               

               
               685-782, DB155307 THYMU3 Homo sapiens cDNA clone THYMU3033586 5', mRNA 
(dbj|DB155307.1|), blast E-value=4e-30, identity=92.86% 
               

               
               685-782, DB331924 SMINT2 Homo sapiens cDNA clone SMINT2006708 3', mRNA 
(dbj|DB331924.1|), blast E-value=2e-32, identity=93.88% 
               

               
               685-782, DB351996 UTERU2 Homo sapiens cDNA clone UTERU2033375 3', mRNA 
(dbj|DB351996.1|), blast E-value=4e-30, identity=92.86% 
               

               
               680-782, 602633619F1 NCI_CGAP_Skn3 Homo sapiens cDNA clone IMAGE 
(gb|BG741213.1|), blast E-value=9e-25, identity=91.43% 
               

               
               659-827, LB0294.CR.1_C07 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV917201.1|), 
blast E-value=1.00053e-42, identity=88.82% 
               

               
               692-782, DB074348 TESTI4 Homo sapiens cDNA clone TESTI4017931 5', mRNA 
(dbj|DB074348.1|), blast E-value=4e-26, identity=92.31% 
               

               
               692-782, DB155307 THYMU3 Homo sapiens cDNA clone THYMU3033586 5', mRNA 
(dbj|DB155307.1|), blast E-value=4e-26, identity=92.31% 
               

               
               692-782, DB331924 SMINT2 Homo sapiens cDNA clone SMINT2006708 3', mRNA 
(dbj|DB331924.1|), blast E-value=1e-28, identity=93.41% 
               

               
               692-782, DB351996 UTERU2 Homo sapiens cDNA clone UTERU2033375 3', mRNA 
(dbj|DB351996.1|), blast E-value=4e-26, identity=92.31% 
               

               
               692-782, 602633619F1 NCI_CGAP_Skn3 Homo sapiens cDNA clone IMAGE 
(gb|BG741213.1|), blast E-value=5e-22, identity=91.3% 
               

               
               698-786, LB0294.CR.1_C07 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV917201.1|), 
blast E-value=6e-25, identity=92.13%

Similar Transcript(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               685-782, DB074348 TESTI4 Homo sapiens cDNA clone TESTI4017931 5', mRNA 
(dbj|DB074348.1|), blast E-value=4e-30, identity=92.86% 
               

               
               685-782, DB155307 THYMU3 Homo sapiens cDNA clone THYMU3033586 5', mRNA 
(dbj|DB155307.1|), blast E-value=4e-30, identity=92.86% 
               

               
               685-782, DB331924 SMINT2 Homo sapiens cDNA clone SMINT2006708 3', mRNA 
(dbj|DB331924.1|), blast E-value=2e-32, identity=93.88% 
               

               
               685-782, DB351996 UTERU2 Homo sapiens cDNA clone UTERU2033375 3', mRNA 
(dbj|DB351996.1|), blast E-value=4e-30, identity=92.86% 
               

               
               680-782, 602633619F1 NCI_CGAP_Skn3 Homo sapiens cDNA clone IMAGE 
(gb|BG741213.1|), blast E-value=9e-25, identity=91.43% 
               

               
               659-827, LB0294.CR.1_C07 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV917201.1|), 
blast E-value=1.00053e-42, identity=88.82% 
               

               
               692-782, DB074348 TESTI4 Homo sapiens cDNA clone TESTI4017931 5', mRNA 
(dbj|DB074348.1|), blast E-value=4e-26, identity=92.31% 
               

               
               692-782, DB155307 THYMU3 Homo sapiens cDNA clone THYMU3033586 5', mRNA 
(dbj|DB155307.1|), blast E-value=4e-26, identity=92.31% 
               

               
               692-782, DB331924 SMINT2 Homo sapiens cDNA clone SMINT2006708 3', mRNA 
(dbj|DB331924.1|), blast E-value=1e-28, identity=93.41% 
               

               
               692-782, DB351996 UTERU2 Homo sapiens cDNA clone UTERU2033375 3', mRNA 
(dbj|DB351996.1|), blast E-value=4e-26, identity=92.31% 
               

               
               692-782, 602633619F1 NCI_CGAP_Skn3 Homo sapiens cDNA clone IMAGE 
(gb|BG741213.1|), blast E-value=5e-22, identity=91.3% 
               

               
               698-786, LB0294.CR.1_C07 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV917201.1|), 
blast E-value=6e-25, identity=92.13%

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

Help | Less info


               
               1-625, gnl|bosTau2|chr25 (19044873-19045505)
               

               
               1-625, gnl|Hg17|chr16 (22986485-22987093)
               

               
               1-625, gnl|Mm7|chr7 (117570102-117570685)
               


               
               659-842, gnl|bosTau2|chr25 (19045572-19045757)
               

               
               659-842, gnl|canFam2|chr6 (25715119-25714757)
               

               
               659-842, gnl|danRer3|chr24 (12922988-12923360)
               

               
               659-842, gnl|dasNov1|scaffold_3209 (121206-120844)
               

               
               659-842, gnl|echTel1|scaffold_303750 (7534-7896)
               

               
               659-842, gnl|fr1|chrUn (21693184-21693574)
               

               
               659-842, gnl|galGal2|chr14 (9029858-9029499)
               

               
               659-842, gnl|hg17|chr16 (22986978-22987340)
               

               
               659-842, gnl|Hg17|chr16 (22987160-22987345)
               

               
               659-842, gnl|loxAfr1|scaffold_3099 (74110-73748)
               

               
               659-842, gnl|mm7|chr7 (117570576-117570932)
               

               
               659-842, gnl|Mm7|chr7 (117570752-117570937)
               

               
               659-842, gnl|monDom2|scaffold_17 (44218727-44218365)
               

               
               659-842, gnl|panTro1|chr18 (23600457-23600819)
               

               
               659-842, gnl|rheMac2|chr20 (21524882-21525244)
               

               
               659-842, gnl|rn3|chr1 (180607130-180607492)
               

               
               659-842, gnl|tetNig1|chr2 (5255916-5255520)
               

               
               659-842, gnl|xenTro1|scaffold_6 (5099045-5099347)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-625, gnl|bosTau2|chr25 (19044873-19045505)
               

               
               1-625, gnl|Hg17|chr16 (22986485-22987093)
               

               
               1-625, gnl|Mm7|chr7 (117570102-117570685)
               


               
               659-842, gnl|bosTau2|chr25 (19045572-19045757)
               

               
               659-842, gnl|canFam2|chr6 (25715119-25714757)
               

               
               659-842, gnl|danRer3|chr24 (12922988-12923360)
               

               
               659-842, gnl|dasNov1|scaffold_3209 (121206-120844)
               

               
               659-842, gnl|echTel1|scaffold_303750 (7534-7896)
               

               
               659-842, gnl|fr1|chrUn (21693184-21693574)
               

               
               659-842, gnl|galGal2|chr14 (9029858-9029499)
               

               
               659-842, gnl|hg17|chr16 (22986978-22987340)
               

               
               659-842, gnl|Hg17|chr16 (22987160-22987345)
               

               
               659-842, gnl|loxAfr1|scaffold_3099 (74110-73748)
               

               
               659-842, gnl|mm7|chr7 (117570576-117570932)
               

               
               659-842, gnl|Mm7|chr7 (117570752-117570937)
               

               
               659-842, gnl|monDom2|scaffold_17 (44218727-44218365)
               

               
               659-842, gnl|panTro1|chr18 (23600457-23600819)
               

               
               659-842, gnl|rheMac2|chr20 (21524882-21525244)
               

               
               659-842, gnl|rn3|chr1 (180607130-180607492)
               

               
               659-842, gnl|tetNig1|chr2 (5255916-5255520)
               

               
               659-842, gnl|xenTro1|scaffold_6 (5099045-5099347)

	659-842, + strand, RNAz p=0.996801
	692-808, - strand, RNAz p=0.974218

	709-811, + strand, RNAmicro p=0.997841
	724-807, - strand, RNAmicro p=0.996813

	685-782, DB074348 TESTI4 Homo sapiens cDNA clone TESTI4017931 5', mRNA (dbj\|DB074348.1\|), blast E-value=4e-30, identity=92.86%
	685-782, DB155307 THYMU3 Homo sapiens cDNA clone THYMU3033586 5', mRNA (dbj\|DB155307.1\|), blast E-value=4e-30, identity=92.86%
	685-782, DB331924 SMINT2 Homo sapiens cDNA clone SMINT2006708 3', mRNA (dbj\|DB331924.1\|), blast E-value=2e-32, identity=93.88%
	685-782, DB351996 UTERU2 Homo sapiens cDNA clone UTERU2033375 3', mRNA (dbj\|DB351996.1\|), blast E-value=4e-30, identity=92.86%
	680-782, 602633619F1 NCI_CGAP_Skn3 Homo sapiens cDNA clone IMAGE (gb\|BG741213.1\|), blast E-value=9e-25, identity=91.43%
	659-827, LB0294.CR.1_C07 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|DV917201.1\|), blast E-value=1.00053e-42, identity=88.82%
	692-782, DB074348 TESTI4 Homo sapiens cDNA clone TESTI4017931 5', mRNA (dbj\|DB074348.1\|), blast E-value=4e-26, identity=92.31%
	692-782, DB155307 THYMU3 Homo sapiens cDNA clone THYMU3033586 5', mRNA (dbj\|DB155307.1\|), blast E-value=4e-26, identity=92.31%
	692-782, DB331924 SMINT2 Homo sapiens cDNA clone SMINT2006708 3', mRNA (dbj\|DB331924.1\|), blast E-value=1e-28, identity=93.41%
	692-782, DB351996 UTERU2 Homo sapiens cDNA clone UTERU2033375 3', mRNA (dbj\|DB351996.1\|), blast E-value=4e-26, identity=92.31%
	692-782, 602633619F1 NCI_CGAP_Skn3 Homo sapiens cDNA clone IMAGE (gb\|BG741213.1\|), blast E-value=5e-22, identity=91.3%
	698-786, LB0294.CR.1_C07 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|DV917201.1\|), blast E-value=6e-25, identity=92.13%

	1-625, gnl\|bosTau2\|chr25 (19044873-19045505)
	1-625, gnl\|Hg17\|chr16 (22986485-22987093)
	1-625, gnl\|Mm7\|chr7 (117570102-117570685)

	659-842, gnl\|bosTau2\|chr25 (19045572-19045757)
	659-842, gnl\|canFam2\|chr6 (25715119-25714757)
	659-842, gnl\|danRer3\|chr24 (12922988-12923360)
	659-842, gnl\|dasNov1\|scaffold_3209 (121206-120844)
	659-842, gnl\|echTel1\|scaffold_303750 (7534-7896)
	659-842, gnl\|fr1\|chrUn (21693184-21693574)
	659-842, gnl\|galGal2\|chr14 (9029858-9029499)
	659-842, gnl\|hg17\|chr16 (22986978-22987340)
	659-842, gnl\|Hg17\|chr16 (22987160-22987345)
	659-842, gnl\|loxAfr1\|scaffold_3099 (74110-73748)
	659-842, gnl\|mm7\|chr7 (117570576-117570932)
	659-842, gnl\|Mm7\|chr7 (117570752-117570937)
	659-842, gnl\|monDom2\|scaffold_17 (44218727-44218365)
	659-842, gnl\|panTro1\|chr18 (23600457-23600819)
	659-842, gnl\|rheMac2\|chr20 (21524882-21525244)
	659-842, gnl\|rn3\|chr1 (180607130-180607492)
	659-842, gnl\|tetNig1\|chr2 (5255916-5255520)
	659-842, gnl\|xenTro1\|scaffold_6 (5099045-5099347)