Non-Coding RNA Search

uFN-UNL-P-FN-cm-c-08-0-UNL.s1

Sequence:


               
               TCCTCCTTCTGTACCTGCTCCCGAGGCCCCCNTNGCGCCACANNTGGGCGTCTTGTTTTN
AAACACGCAGTGCTTCTCGCGCAGGTGCTTCTCCAGCAGGATGATGGCGTGGAAGGCTTT
GCTACAGAACTTGCAGTTGTACNTCTTGCTGTGGGTGGTGATGTGGCACTGCAGCTCCAC
CTCGGTGCCGAAGGACTCACCGCAGAAGATGCACTTGTGCACCTTGCCCTGGTTCTCCNA
GGTGGTTGTGCTTCACATGGAGCTGCAGGTCCGTCTCATTACGGAAGTCCCAGTTGCAGG
ATGTGCAGCGGTAGACTTTCTTCTCGTTACTGTGCTTCACCGCCAAGTGGAGCTGGATGG
AGACTTTGGAGTCGAACACTTCTTGGCAGAGGGTGCAGCGAAAGAAGACAAAGGTGTGCA
TGTCCAGCAGGTGTTTCTGAAGGTCATCCACCGATGTGAACTGCTTGTCACAACTCTCAC
AGATATAGTAGGTGGAAGTAATCATAAAATGGATGGTGACGTGCTTCAGCAGGGACTCCT
GGTTGGGGAACTCCTTGTTACACTGGGGACAGGTAAGTTTGGGCAGCACAGTGTCCAGAT
GAGTTTTCAGGTGAGTCTGAAAGCTGTCTAGGGAAGTGTACTTAGCACCACACTGATTGC
AGATGTACTCTCCCGCTGGCCGTGCAGACGCGCCCCCCACTGCCTGCATCATCTTAAGAG
ATGTCTGTTCTATGGCCACGGGAGAGAGGGGGCTCAAGGCCCTGGATTTCTTCCCGTTGT
GAATATAATTCAGGGCCAAGAGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTCCTTCTGTACCTGCTCCCGAGGCCCCCNTNGCGCCACANNTGGGCGTCTTGTTTTN
AAACACGCAGTGCTTCTCGCGCAGGTGCTTCTCCAGCAGGATGATGGCGTGGAAGGCTTT
GCTACAGAACTTGCAGTTGTACNTCTTGCTGTGGGTGGTGATGTGGCACTGCAGCTCCAC
CTCGGTGCCGAAGGACTCACCGCAGAAGATGCACTTGTGCACCTTGCCCTGGTTCTCCNA
GGTGGTTGTGCTTCACATGGAGCTGCAGGTCCGTCTCATTACGGAAGTCCCAGTTGCAGG
ATGTGCAGCGGTAGACTTTCTTCTCGTTACTGTGCTTCACCGCCAAGTGGAGCTGGATGG
AGACTTTGGAGTCGAACACTTCTTGGCAGAGGGTGCAGCGAAAGAAGACAAAGGTGTGCA
TGTCCAGCAGGTGTTTCTGAAGGTCATCCACCGATGTGAACTGCTTGTCACAACTCTCAC
AGATATAGTAGGTGGAAGTAATCATAAAATGGATGGTGACGTGCTTCAGCAGGGACTCCT
GGTTGGGGAACTCCTTGTTACACTGGGGACAGGTAAGTTTGGGCAGCACAGTGTCCAGAT
GAGTTTTCAGGTGAGTCTGAAAGCTGTCTAGGGAAGTGTACTTAGCACCACACTGATTGC
AGATGTACTCTCCCGCTGGCCGTGCAGACGCGCCCCCCACTGCCTGCATCATCTTAAGAG
ATGTCTGTTCTATGGCCACGGGAGAGAGGGGGCTCAAGGCCCTGGATTTCTTCCCGTTGT
GAATATAATTCAGGGCCAAGAGCGGCCGC

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               160-319, - strand, RNAz p=0.981301
               

               
               378-537, + strand, RNAz p=0.958753
               

               
               520-639, - strand, RNAz p=0.525211
               

               
               680-800, + strand, RNAz p=0.957777

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-319, - strand, RNAz p=0.981301
               

               
               378-537, + strand, RNAz p=0.958753
               

               
               520-639, - strand, RNAz p=0.525211
               

               
               680-800, + strand, RNAz p=0.957777

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               358-450, + strand, RNAmicro p=0.989503

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               358-450, + strand, RNAmicro p=0.989503

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-800, gnl|bosTau2|chr24 (22600626-22601423)
               

               
               1-800, gnl|Hg17|chr18 (21059316-21060113)
               

               
               1-800, gnl|Mm7|chr18 (14194129-14194926)
               


               
               59-673, gnl|bosTau2|chr18 (20667450-20666837)
               

               
               59-673, gnl|Hg17|chr16 (48228063-48228676)
               

               
               59-673, gnl|Mm7|chr8 (86373489-86374102)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-800, gnl|bosTau2|chr24 (22600626-22601423)
               

               
               1-800, gnl|Hg17|chr18 (21059316-21060113)
               

               
               1-800, gnl|Mm7|chr18 (14194129-14194926)
               


               
               59-673, gnl|bosTau2|chr18 (20667450-20666837)
               

               
               59-673, gnl|Hg17|chr16 (48228063-48228676)
               

               
               59-673, gnl|Mm7|chr8 (86373489-86374102)

	160-319, - strand, RNAz p=0.981301
	378-537, + strand, RNAz p=0.958753
	520-639, - strand, RNAz p=0.525211
	680-800, + strand, RNAz p=0.957777

	1-800, gnl\|bosTau2\|chr24 (22600626-22601423)
	1-800, gnl\|Hg17\|chr18 (21059316-21060113)
	1-800, gnl\|Mm7\|chr18 (14194129-14194926)

	59-673, gnl\|bosTau2\|chr18 (20667450-20666837)
	59-673, gnl\|Hg17\|chr16 (48228063-48228676)
	59-673, gnl\|Mm7\|chr8 (86373489-86374102)