Non-Coding RNA Search

uFN-UNL-P-FN-cn-a-10-0-UNL.s1

Sequence:


               
               NGGAGGATTTCGCCTTCATGNCTCCATACNAAGNAAACACANTCTNCCCCTGCGNTGATA
AGNTAATTCTCNAGGAGNTTGNCCTCCCAAACGCGGGCACTGTNCCNAAAGCAGTGCCNA
ATATTCTGCACTCGCCCCCCCAGGCNCCCGCAGGTCNCCCNCCTTCCCAGATGCGAACAC
TTCGGTCTTCTGAAGCCGTGGCCAACAANCCCTTGCTTTCCAGGTATNACATNCTGAAGA
TAACACCCACATNCCCACTGNCCCGTCGGTCGGGGGCTACAGGCTTGTTGTCTATCAGAG
CGGCTGCTGGGTACCAGACCAGGAGCTGGTTGGAAACGGCACCCGCCACTATGGTCAGCT
CCTTCCAGGTGTCTCCAATCAGACAGGCTGAGGAGAGGGTGCACCTGTCTGTGCAGGGCA
CGTCCTGCAGGATGCACCCTACCACAGGGTCGTACAGCACTACTGAGTTGTGGCCCAGGG
CCAAGGCCATGTTCCCCTCGAGCCAACGTGCATCCCAGATCCAGTCAGACAAGTTCCACA
AGCCAGAGCGCCAGAGCTCCCGGAAGCGGCCCTGTCCCCAGCTAATTTTCACAATTCGGA
GTCCCAGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               NGGAGGATTTCGCCTTCATGNCTCCATACNAAGNAAACACANTCTNCCCCTGCGNTGATA
AGNTAATTCTCNAGGAGNTTGNCCTCCCAAACGCGGGCACTGTNCCNAAAGCAGTGCCNA
ATATTCTGCACTCGCCCCCCCAGGCNCCCGCAGGTCNCCCNCCTTCCCAGATGCGAACAC
TTCGGTCTTCTGAAGCCGTGGCCAACAANCCCTTGCTTTCCAGGTATNACATNCTGAAGA
TAACACCCACATNCCCACTGNCCCGTCGGTCGGGGGCTACAGGCTTGTTGTCTATCAGAG
CGGCTGCTGGGTACCAGACCAGGAGCTGGTTGGAAACGGCACCCGCCACTATGGTCAGCT
CCTTCCAGGTGTCTCCAATCAGACAGGCTGAGGAGAGGGTGCACCTGTCTGTGCAGGGCA
CGTCCTGCAGGATGCACCCTACCACAGGGTCGTACAGCACTACTGAGTTGTGGCCCAGGG
CCAAGGCCATGTTCCCCTCGAGCCAACGTGCATCCCAGATCCAGTCAGACAAGTTCCACA
AGCCAGAGCGCCAGAGCTCCCGGAAGCGGCCCTGTCCCCAGCTAATTTTCACAATTCGGA
GTCCCAGCGGCCGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               81-200, - strand, RNAz p=0.776489
               

               
               321-520, - strand, RNAz p=0.971954

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-200, - strand, RNAz p=0.776489
               

               
               321-520, - strand, RNAz p=0.971954

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of AF099100, -
               

               
               5' of AF099100, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF099100, -
               

               
               5' of AF099100, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-605, gnl|bosTau2|chr22 (40008132-40007531)
               

               
               2-605, gnl|Hg17|chr3 (49024842-49024241)
               

               
               2-605, gnl|Mm7|chr9 (108288577-108289178)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-605, gnl|bosTau2|chr22 (40008132-40007531)
               

               
               2-605, gnl|Hg17|chr3 (49024842-49024241)
               

               
               2-605, gnl|Mm7|chr9 (108288577-108289178)

	81-200, - strand, RNAz p=0.776489
	321-520, - strand, RNAz p=0.971954

	2-605, gnl\|bosTau2\|chr22 (40008132-40007531)
	2-605, gnl\|Hg17\|chr3 (49024842-49024241)
	2-605, gnl\|Mm7\|chr9 (108288577-108289178)