Non-Coding RNA Search

uFN-UNL-P-FN-co-d-06-0-UNL.s1

Sequence:


               
               AGAGTGCTGTAAGGTGCTGTGGGATCTGCGGAGGAAGCAGTGGGGGCTGGGNNNNGGTCC
CCTGGCTCCCACCTCCCAGCACCGCCTCTCCCAGGTCTCCCAGTCCCTCTCCCTGCTAAT
ACCCACCTCTGATCCATGATTACTCTTCATCACCCCTAAATCAGGGGTGCATGGAGGGCT
GACCCTGGGAGCCAGGAAGACCTCAGACCCTGGAGCCCCCAGGCCCAGTTTCCCGGCTGC
TTGCCCCTCAGATTGGATGCTTGGCCCTCAGACTTGGGGGAGGCACCCCGACATTAATCT
TCCTGATCTTGAGTCTAAGCCAGTCTGTGACCTCAATATTGTTATCATCAGTGCAGGCTG
AAGTAGTGGGGGAGGATGGGGGCCAAAGACCCAGCCTTGTCATTGGAGGAGGGGGCNTGA
GATATCGGCTCCAAGAAATGTCTGTGACAAAGTCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGTGCTGTAAGGTGCTGTGGGATCTGCGGAGGAAGCAGTGGGGGCTGGGNNNNGGTCC
CCTGGCTCCCACCTCCCAGCACCGCCTCTCCCAGGTCTCCCAGTCCCTCTCCCTGCTAAT
ACCCACCTCTGATCCATGATTACTCTTCATCACCCCTAAATCAGGGGTGCATGGAGGGCT
GACCCTGGGAGCCAGGAAGACCTCAGACCCTGGAGCCCCCAGGCCCAGTTTCCCGGCTGC
TTGCCCCTCAGATTGGATGCTTGGCCCTCAGACTTGGGGGAGGCACCCCGACATTAATCT
TCCTGATCTTGAGTCTAAGCCAGTCTGTGACCTCAATATTGTTATCATCAGTGCAGGCTG
AAGTAGTGGGGGAGGATGGGGGCCAAAGACCCAGCCTTGTCATTGGAGGAGGGGGCNTGA
GATATCGGCTCCAAGAAATGTCTGTGACAAAGTCAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               40-238, - strand, RNAz p=0.997449

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-238, - strand, RNAz p=0.997449

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               16-124, + strand, RNAmicro p=0.999716
               

               
               170-270, - strand, RNAmicro p=0.99088

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               16-124, + strand, RNAmicro p=0.999716
               

               
               170-270, - strand, RNAmicro p=0.99088

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               56-234, UI-H-EU1-azy-e-06-0-UI.s1 NCI_CGAP_Ct1 Homo sapiens cDNA clone 
(gb|BQ445911.1|), blast E-value=0, identity=89.39% 
               

               
               56-234, AGENCOURT_8867898 NIH_MGC_42 Homo sapiens cDNA clone IMAGE 
(gb|BU501779.1|), blast E-value=0, identity=89.39% 
               

               
               56-234, UI-H-FL1-bga-j-13-0-UI.s1 NCI_CGAP_FL1 Homo sapiens cDNA clone 
(gb|BU621623.1|), blast E-value=0, identity=89.39% 
               

               
               56-234, UI-E-CL1-afd-h-11-0-UI.s1 UI-E-CL1 Homo sapiens cDNA clone 
(gb|BU729325.1|), blast E-value=0, identity=89.39% 
               

               
               56-234, UI-CF-FN0-afs-g-06-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone 
(gb|CB853161.1|), blast E-value=0, identity=89.39% 
               

               
               40-234, BovGen_13348 normal cattle brain Bos taurus cDNA clone (gb|CO885023.1|), 
blast E-value=0, identity=93.85%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               56-234, UI-H-EU1-azy-e-06-0-UI.s1 NCI_CGAP_Ct1 Homo sapiens cDNA clone 
(gb|BQ445911.1|), blast E-value=0, identity=89.39% 
               

               
               56-234, AGENCOURT_8867898 NIH_MGC_42 Homo sapiens cDNA clone IMAGE 
(gb|BU501779.1|), blast E-value=0, identity=89.39% 
               

               
               56-234, UI-H-FL1-bga-j-13-0-UI.s1 NCI_CGAP_FL1 Homo sapiens cDNA clone 
(gb|BU621623.1|), blast E-value=0, identity=89.39% 
               

               
               56-234, UI-E-CL1-afd-h-11-0-UI.s1 UI-E-CL1 Homo sapiens cDNA clone 
(gb|BU729325.1|), blast E-value=0, identity=89.39% 
               

               
               56-234, UI-CF-FN0-afs-g-06-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone 
(gb|CB853161.1|), blast E-value=0, identity=89.39% 
               

               
               40-234, BovGen_13348 normal cattle brain Bos taurus cDNA clone (gb|CO885023.1|), 
blast E-value=0, identity=93.85%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-454, gnl|bosTau2|chr18 (41100875-41100427)
               

               
               1-454, gnl|Hg17|chr19 (43581614-43582064)
               

               
               1-454, gnl|Mm7|chr7 (26098690-26098261)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-454, gnl|bosTau2|chr18 (41100875-41100427)
               

               
               1-454, gnl|Hg17|chr19 (43581614-43582064)
               

               
               1-454, gnl|Mm7|chr7 (26098690-26098261)

	16-124, + strand, RNAmicro p=0.999716
	170-270, - strand, RNAmicro p=0.99088

	56-234, UI-H-EU1-azy-e-06-0-UI.s1 NCI_CGAP_Ct1 Homo sapiens cDNA clone (gb\|BQ445911.1\|), blast E-value=0, identity=89.39%
	56-234, AGENCOURT_8867898 NIH_MGC_42 Homo sapiens cDNA clone IMAGE (gb\|BU501779.1\|), blast E-value=0, identity=89.39%
	56-234, UI-H-FL1-bga-j-13-0-UI.s1 NCI_CGAP_FL1 Homo sapiens cDNA clone (gb\|BU621623.1\|), blast E-value=0, identity=89.39%
	56-234, UI-E-CL1-afd-h-11-0-UI.s1 UI-E-CL1 Homo sapiens cDNA clone (gb\|BU729325.1\|), blast E-value=0, identity=89.39%
	56-234, UI-CF-FN0-afs-g-06-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone (gb\|CB853161.1\|), blast E-value=0, identity=89.39%
	40-234, BovGen_13348 normal cattle brain Bos taurus cDNA clone (gb\|CO885023.1\|), blast E-value=0, identity=93.85%

	1-454, gnl\|bosTau2\|chr18 (41100875-41100427)
	1-454, gnl\|Hg17\|chr19 (43581614-43582064)
	1-454, gnl\|Mm7\|chr7 (26098690-26098261)