Non-Coding RNA Search

uFN-UNL-P-FN-co-h-03-0-UNL.s1

Sequence:


               
               CGTCTTCAGCCGCAAGCCCCCGGACACTTCGGCACCTGCCTCGAACCCCACGGCCGGAGC
TGGACGTAGCCCCCTACGACCCCCACTTCCCTGACCCGGCCCGGGACAGCTTCCCCGAGC
CGAGCATGGCGCTACCTGGGCCAGAGGCCTTGCCGGCGGAGTGCGGTTTCGAACCGCCGC
ACCTGGCACCCCTGAGCGACCCTGAGGCTCCCACCATGGAGTCTCCGGAGCCCGTGAAGC
CAGAACAGGGCTTCGTGTGGCAAGAGGCAGGCGAGTTCGAGGCTGATGCGGCGGGCTCGA
CAGTGGAGCGTCACAAGAAGGCCCAACTGGACCGGCTGGACATCAACGTGCAGATTGATG
ACTCGTACCTGGTGGAGGCGGGAGACCGCCAGAAGCGCTGGCAGTGCCGCATGTGCGAGA
AGTCCTACACATCCAAGTACAACCTGGTGACGCACATCCTGGGCCACAACGGCATCAAGC
CGCACTCGTGCCCGCATTGCAGCAAGCTCTTCAAGCAGCCTAGCCATTTGCAGACACACC
TGCTGACGCACCAGGGCACCCGGCCGCACAAGTGCCAGGTGTGCCAGAAGGCCTTCACAC
AGACCAGCCACCTCAAGCGTCACATGCTGCTGCACTCGGAGGTCAAGCCCTACAGCTGCC
ATTTCTGTGGCCGCGGCTTTGCCTACCCCAGCGAGCTCAAGGCCCACGAGGTGAAGCATG
AGAGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTCTTCAGCCGCAAGCCCCCGGACACTTCGGCACCTGCCTCGAACCCCACGGCCGGAGC
TGGACGTAGCCCCCTACGACCCCCACTTCCCTGACCCGGCCCGGGACAGCTTCCCCGAGC
CGAGCATGGCGCTACCTGGGCCAGAGGCCTTGCCGGCGGAGTGCGGTTTCGAACCGCCGC
ACCTGGCACCCCTGAGCGACCCTGAGGCTCCCACCATGGAGTCTCCGGAGCCCGTGAAGC
CAGAACAGGGCTTCGTGTGGCAAGAGGCAGGCGAGTTCGAGGCTGATGCGGCGGGCTCGA
CAGTGGAGCGTCACAAGAAGGCCCAACTGGACCGGCTGGACATCAACGTGCAGATTGATG
ACTCGTACCTGGTGGAGGCGGGAGACCGCCAGAAGCGCTGGCAGTGCCGCATGTGCGAGA
AGTCCTACACATCCAAGTACAACCTGGTGACGCACATCCTGGGCCACAACGGCATCAAGC
CGCACTCGTGCCCGCATTGCAGCAAGCTCTTCAAGCAGCCTAGCCATTTGCAGACACACC
TGCTGACGCACCAGGGCACCCGGCCGCACAAGTGCCAGGTGTGCCAGAAGGCCTTCACAC
AGACCAGCCACCTCAAGCGTCACATGCTGCTGCACTCGGAGGTCAAGCCCTACAGCTGCC
ATTTCTGTGGCCGCGGCTTTGCCTACCCCAGCGAGCTCAAGGCCCACGAGGTGAAGCATG
AGAGCGGCCGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               397-716, - strand, RNAz p=0.900307
               

               
               447-646, - strand, RNAz p=0.611365

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               397-716, - strand, RNAz p=0.900307
               

               
               447-646, - strand, RNAz p=0.611365

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               434-570, - strand, RNAmicro p=0.939633
               

               
               565-720, + strand, RNAmicro p=0.928786

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               434-570, - strand, RNAmicro p=0.939633
               

               
               565-720, + strand, RNAmicro p=0.928786

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               1-731, gnl|bosTau2|chr21 (11851870-11852599)
               

               
               1-731, gnl|Hg17|chr15 (88411859-88412588)
               

               
               1-731, gnl|Mm7|chr7 (75949115-75949847)
               


               
               328-730, gnl|bosTau2|chr20 (6661131-6660729)
               

               
               328-730, gnl|canFam2|chr2 (58347709-58348215)
               

               
               328-730, gnl|danRer3|chrUn (135965845-135965345)
               

               
               328-730, gnl|dasNov1|scaffold_43411 (31651-32169)
               

               
               328-730, gnl|echTel1|scaffold_304850 (51694-51176)
               

               
               328-730, gnl|fr1|chrUn (46280391-46279789)
               

               
               328-730, gnl|galGal2|chrZ (11110471-11110989)
               

               
               328-730, gnl|hg17|chr5 (71791897-71792415)
               

               
               328-730, gnl|Hg17|chr5 (71792394-71791992)
               

               
               328-730, gnl|loxAfr1|scaffold_4645 (63515-63003)
               

               
               328-730, gnl|mm7|chr13 (96299305-96298787)
               

               
               328-730, gnl|Mm7|chr13 (96298806-96299208)
               

               
               328-730, gnl|monDom2|scaffold_60 (5516491-5517009)
               

               
               328-730, gnl|oryCun1|scaffold_180505 (101031-100513)
               

               
               328-730, gnl|panTro1|chr4 (43670718-43670200)
               

               
               328-730, gnl|rheMac2|chr6 (68602347-68602865)
               

               
               328-730, gnl|rn3|chr2 (30140534-30140016)
               

               
               328-730, gnl|tetNig1|chr12 (9178571-9177990)
               

               
               328-730, gnl|xenTro1|scaffold_120 (736149-736664)

Aligned organism(s): 22 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-731, gnl|bosTau2|chr21 (11851870-11852599)
               

               
               1-731, gnl|Hg17|chr15 (88411859-88412588)
               

               
               1-731, gnl|Mm7|chr7 (75949115-75949847)
               


               
               328-730, gnl|bosTau2|chr20 (6661131-6660729)
               

               
               328-730, gnl|canFam2|chr2 (58347709-58348215)
               

               
               328-730, gnl|danRer3|chrUn (135965845-135965345)
               

               
               328-730, gnl|dasNov1|scaffold_43411 (31651-32169)
               

               
               328-730, gnl|echTel1|scaffold_304850 (51694-51176)
               

               
               328-730, gnl|fr1|chrUn (46280391-46279789)
               

               
               328-730, gnl|galGal2|chrZ (11110471-11110989)
               

               
               328-730, gnl|hg17|chr5 (71791897-71792415)
               

               
               328-730, gnl|Hg17|chr5 (71792394-71791992)
               

               
               328-730, gnl|loxAfr1|scaffold_4645 (63515-63003)
               

               
               328-730, gnl|mm7|chr13 (96299305-96298787)
               

               
               328-730, gnl|Mm7|chr13 (96298806-96299208)
               

               
               328-730, gnl|monDom2|scaffold_60 (5516491-5517009)
               

               
               328-730, gnl|oryCun1|scaffold_180505 (101031-100513)
               

               
               328-730, gnl|panTro1|chr4 (43670718-43670200)
               

               
               328-730, gnl|rheMac2|chr6 (68602347-68602865)
               

               
               328-730, gnl|rn3|chr2 (30140534-30140016)
               

               
               328-730, gnl|tetNig1|chr12 (9178571-9177990)
               

               
               328-730, gnl|xenTro1|scaffold_120 (736149-736664)

	397-716, - strand, RNAz p=0.900307
	447-646, - strand, RNAz p=0.611365

	434-570, - strand, RNAmicro p=0.939633
	565-720, + strand, RNAmicro p=0.928786

	1-731, gnl\|bosTau2\|chr21 (11851870-11852599)
	1-731, gnl\|Hg17\|chr15 (88411859-88412588)
	1-731, gnl\|Mm7\|chr7 (75949115-75949847)

	328-730, gnl\|bosTau2\|chr20 (6661131-6660729)
	328-730, gnl\|canFam2\|chr2 (58347709-58348215)
	328-730, gnl\|danRer3\|chrUn (135965845-135965345)
	328-730, gnl\|dasNov1\|scaffold_43411 (31651-32169)
	328-730, gnl\|echTel1\|scaffold_304850 (51694-51176)
	328-730, gnl\|fr1\|chrUn (46280391-46279789)
	328-730, gnl\|galGal2\|chrZ (11110471-11110989)
	328-730, gnl\|hg17\|chr5 (71791897-71792415)
	328-730, gnl\|Hg17\|chr5 (71792394-71791992)
	328-730, gnl\|loxAfr1\|scaffold_4645 (63515-63003)
	328-730, gnl\|mm7\|chr13 (96299305-96298787)
	328-730, gnl\|Mm7\|chr13 (96298806-96299208)
	328-730, gnl\|monDom2\|scaffold_60 (5516491-5517009)
	328-730, gnl\|oryCun1\|scaffold_180505 (101031-100513)
	328-730, gnl\|panTro1\|chr4 (43670718-43670200)
	328-730, gnl\|rheMac2\|chr6 (68602347-68602865)
	328-730, gnl\|rn3\|chr2 (30140534-30140016)
	328-730, gnl\|tetNig1\|chr12 (9178571-9177990)
	328-730, gnl\|xenTro1\|scaffold_120 (736149-736664)