unkn-118A03
|
TTTTTTTTTTTTTTTGCTCCCACAGCTTTTTGTGGGGCAATATTAAACCCTGGCCCACCC
AATCAATGGTTTTTTTTAAAAAAGTCTTCTGCTTACCAAAATTTTCTTGAGGAAAAAAAT
TCCAAAAGGGAGGGCTTTTAAAAATAATTCACCCTTTGAAAAATTCCAATTGGGCCCAAG
GCTACTGAGGCCTAAAGGGTCTCCTAACTTTCTGAGGGGGTCCTTCCACATGACTCCAAA
CCCCCCTTTAAGTTAAAAGGGGGTTAAAGGGCCTTGCCCCCAAATAGAAAAAATCCCGGG
CCTTCCTTACTAAAGCCGGGCCCATAAAAAGGGAGGGCCCTTTGGTTCATACCAAAGGCC
CGGGGATTAATCCCCCTATAAAATTAAGGGGTCGGGGGAAAATTTTTACAAATCCAGGGG
ATTTTGGGCTAGGGCCATCCCCCAACCCCCCNaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTTTTTTTTTTTTTGCTCCCACAGCTTTTTGTGGGGCAATATTAAACCCTGGCCCACCC
AATCAATGGTTTTTTTTAAAAAAGTCTTCTGCTTACCAAAATTTTCTTGAGGAAAAAAAT
TCCAAAAGGGAGGGCTTTTAAAAATAATTCACCCTTTGAAAAATTCCAATTGGGCCCAAG
GCTACTGAGGCCTAAAGGGTCTCCTAACTTTCTGAGGGGGTCCTTCCACATGACTCCAAA
CCCCCCTTTAAGTTAAAAGGGGGTTAAAGGGCCTTGCCCCCAAATAGAAAAAATCCCGGG
CCTTCCTTACTAAAGCCGGGCCCATAAAAAGGGAGGGCCCTTTGGTTCATACCAAAGGCC
CGGGGATTAATCCCCCTATAAAATTAAGGGGTCGGGGGAAAATTTTTACAAATCCAGGGG
ATTTTGGGCTAGGGCCATCCCCCAACCCCCCNaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
220-387, AJ694199 KN261 Bos taurus cDNA clone KN261-043_F07, mRNA sequence
(emb|AJ694199.1|), blast E-value=2e-19, identity=82.74% |
|
236-387, AL537111 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone
(emb|AL537111.3|), blast E-value=2e-19, identity=83.55% |
|
236-387, K-EST0086657 S14K402s1 Homo sapiens cDNA clone S14K402s1-7-E09 5',
(gb|BM818936.1|), blast E-value=2e-19, identity=83.55% |
|
236-387, MCF7RNAL24D04TF Human MCF7 breast cancer cell line near full length
(gb|DN917966.1|), blast E-value=2e-19, identity=83.55% |
|
220-387, Hw_Fat_58_050812_F02 Bos taurus CF-24-HW fat cDNA library Bos
(gb|DV776664.1|), blast E-value=1e-21, identity=83.33% |
|
220-387, LB02711.CR_B13 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV888652.1|),
blast E-value=1e-21, identity=83.33% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
220-387, AJ694199 KN261 Bos taurus cDNA clone KN261-043_F07, mRNA sequence
(emb|AJ694199.1|), blast E-value=2e-19, identity=82.74% |
|
236-387, AL537111 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone
(emb|AL537111.3|), blast E-value=2e-19, identity=83.55% |
|
236-387, K-EST0086657 S14K402s1 Homo sapiens cDNA clone S14K402s1-7-E09 5',
(gb|BM818936.1|), blast E-value=2e-19, identity=83.55% |
|
236-387, MCF7RNAL24D04TF Human MCF7 breast cancer cell line near full length
(gb|DN917966.1|), blast E-value=2e-19, identity=83.55% |
|
220-387, Hw_Fat_58_050812_F02 Bos taurus CF-24-HW fat cDNA library Bos
(gb|DV776664.1|), blast E-value=1e-21, identity=83.33% |
|
220-387, LB02711.CR_B13 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV888652.1|),
blast E-value=1e-21, identity=83.33% |
|
3-432, gnl|bosTau2|chr5 (30029766-30029341) |
|
3-432, gnl|canFam2|chr10 (12979616-12979946) |
|
3-432, gnl|danRer3|chr4 (11752740-11752405) |
|
3-432, gnl|dasNov1|scaffold_29543 (5920-5591) |
|
3-432, gnl|echTel1|scaffold_298040 (7630-7950) |
|
3-432, gnl|galGal2|chr1 (31823914-31824243) |
|
3-432, gnl|hg17|chr12 (66341848-66342176) |
|
3-432, gnl|Hg17|chr12 (66342291-66341866) |
|
3-432, gnl|loxAfr1|scaffold_11040 (11916-12241) |
|
3-432, gnl|mm7|chr10 (118256091-118255751) |
|
3-432, gnl|Mm7|chr10 (118255609-118256071) |
|
3-432, gnl|monDom2|scaffold_168 (383795-383444) |
|
3-432, gnl|oryCun1|scaffold_198108 (87536-87870) |
|
3-432, gnl|panTro1|chr10 (67864909-67865237) |
|
3-432, gnl|rheMac2|chr11 (64652044-64652372) |
|
3-432, gnl|rn3|chr7 (58135766-58135431) |
|
3-432, gnl|xenTro1|scaffold_265 (1447685-1447955) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-432, gnl|bosTau2|chr5 (30029766-30029341) |
|
3-432, gnl|canFam2|chr10 (12979616-12979946) |
|
3-432, gnl|danRer3|chr4 (11752740-11752405) |
|
3-432, gnl|dasNov1|scaffold_29543 (5920-5591) |
|
3-432, gnl|echTel1|scaffold_298040 (7630-7950) |
|
3-432, gnl|galGal2|chr1 (31823914-31824243) |
|
3-432, gnl|hg17|chr12 (66341848-66342176) |
|
3-432, gnl|Hg17|chr12 (66342291-66341866) |
|
3-432, gnl|loxAfr1|scaffold_11040 (11916-12241) |
|
3-432, gnl|mm7|chr10 (118256091-118255751) |
|
3-432, gnl|Mm7|chr10 (118255609-118256071) |
|
3-432, gnl|monDom2|scaffold_168 (383795-383444) |
|
3-432, gnl|oryCun1|scaffold_198108 (87536-87870) |
|
3-432, gnl|panTro1|chr10 (67864909-67865237) |
|
3-432, gnl|rheMac2|chr11 (64652044-64652372) |
|
3-432, gnl|rn3|chr7 (58135766-58135431) |
|
3-432, gnl|xenTro1|scaffold_265 (1447685-1447955) |
