Non-Coding RNA Search

unkn-AJ429246

Sequence:


               
               TAGCTGTTTAACTTTGTAAGATGCAAAGAGGTTGGATCAAGTTTAAATGACTGTGCTGCC
CCTTTTCACATCAAAGAATGGCGAACTACTGACACGAAGGCCGCGCCTGCCTCTCCCATC
TGCCTGGGTGGCTGGCAGGGAAGGAAAAGAACTTGCATGTTGGTGAAGGAGGAAGCTGGG
TGGAATTTAGAGTAAAAAGCGAGCTGGTCCAAGGTGTCCTGCGGGCTGTAAAATGCAGTT
TAATCAGAGTGCCATTTTTTTTTGTTCAAATGATTTTAATTATTGGAATGCACAATTTTT
TTAATATGCAAATAAAAAGTTTAAAACGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGCTGTTTAACTTTGTAAGATGCAAAGAGGTTGGATCAAGTTTAAATGACTGTGCTGCC
CCTTTTCACATCAAAGAATGGCGAACTACTGACACGAAGGCCGCGCCTGCCTCTCCCATC
TGCCTGGGTGGCTGGCAGGGAAGGAAAAGAACTTGCATGTTGGTGAAGGAGGAAGCTGGG
TGGAATTTAGAGTAAAAAGCGAGCTGGTCCAAGGTGTCCTGCGGGCTGTAAAATGCAGTT
TAATCAGAGTGCCATTTTTTTTTGTTCAAATGATTTTAATTATTGGAATGCACAATTTTT
TTAATATGCAAATAAAAAGTTTAAAACGTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5EHZ7_GECJA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5EHZ7_GECJA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               202-299, - strand, RNAz p=0.86452

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-299, - strand, RNAz p=0.86452

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-330, gnl|bosTau2|chr11 (41567706-41568047)
               

               
               1-330, gnl|canFam2|chr1 (24155351-24155013)
               

               
               1-330, gnl|dasNov1|scaffold_24954 (43102-43426)
               

               
               1-330, gnl|echTel1|scaffold_42178 (1279-1615)
               

               
               1-330, gnl|galGal2|chr1 (116600161-116599833)
               

               
               1-330, gnl|hg17|chr2 (176707317-176707662)
               

               
               1-330, gnl|Hg17|chr4 (92117166-92116821)
               

               
               1-330, gnl|loxAfr1|scaffold_26186 (4190-4531)
               

               
               1-330, gnl|mm7|chrX (161981846-161981508)
               

               
               1-330, gnl|Mm7|chrX (161981797-161981456)
               

               
               1-330, gnl|monDom2|scaffold_19 (6782781-6782401)
               

               
               1-330, gnl|oryCun1|scaffold_193577 (1125-1414)
               

               
               1-330, gnl|panTro1|chr13 (66356276-66356621)
               

               
               1-330, gnl|rheMac2|chr12 (39656077-39656423)
               

               
               1-330, gnl|rn3|chr5 (59582402-59582082)
               

               
               1-330, gnl|xenTro1|scaffold_252 (1556515-1556882)
               


               
               9-326, gnl|bosTau2|chr10 (26213136-26213457)
               

               
               9-326, gnl|Hg17|chr9 (128184273-128184592)
               

               
               9-326, gnl|Mm7|chrX (161981790-161981461)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-330, gnl|bosTau2|chr11 (41567706-41568047)
               

               
               1-330, gnl|canFam2|chr1 (24155351-24155013)
               

               
               1-330, gnl|dasNov1|scaffold_24954 (43102-43426)
               

               
               1-330, gnl|echTel1|scaffold_42178 (1279-1615)
               

               
               1-330, gnl|galGal2|chr1 (116600161-116599833)
               

               
               1-330, gnl|hg17|chr2 (176707317-176707662)
               

               
               1-330, gnl|Hg17|chr4 (92117166-92116821)
               

               
               1-330, gnl|loxAfr1|scaffold_26186 (4190-4531)
               

               
               1-330, gnl|mm7|chrX (161981846-161981508)
               

               
               1-330, gnl|Mm7|chrX (161981797-161981456)
               

               
               1-330, gnl|monDom2|scaffold_19 (6782781-6782401)
               

               
               1-330, gnl|oryCun1|scaffold_193577 (1125-1414)
               

               
               1-330, gnl|panTro1|chr13 (66356276-66356621)
               

               
               1-330, gnl|rheMac2|chr12 (39656077-39656423)
               

               
               1-330, gnl|rn3|chr5 (59582402-59582082)
               

               
               1-330, gnl|xenTro1|scaffold_252 (1556515-1556882)
               


               
               9-326, gnl|bosTau2|chr10 (26213136-26213457)
               

               
               9-326, gnl|Hg17|chr9 (128184273-128184592)
               

               
               9-326, gnl|Mm7|chrX (161981790-161981461)

	1-330, gnl\|bosTau2\|chr11 (41567706-41568047)
	1-330, gnl\|canFam2\|chr1 (24155351-24155013)
	1-330, gnl\|dasNov1\|scaffold_24954 (43102-43426)
	1-330, gnl\|echTel1\|scaffold_42178 (1279-1615)
	1-330, gnl\|galGal2\|chr1 (116600161-116599833)
	1-330, gnl\|hg17\|chr2 (176707317-176707662)
	1-330, gnl\|Hg17\|chr4 (92117166-92116821)
	1-330, gnl\|loxAfr1\|scaffold_26186 (4190-4531)
	1-330, gnl\|mm7\|chrX (161981846-161981508)
	1-330, gnl\|Mm7\|chrX (161981797-161981456)
	1-330, gnl\|monDom2\|scaffold_19 (6782781-6782401)
	1-330, gnl\|oryCun1\|scaffold_193577 (1125-1414)
	1-330, gnl\|panTro1\|chr13 (66356276-66356621)
	1-330, gnl\|rheMac2\|chr12 (39656077-39656423)
	1-330, gnl\|rn3\|chr5 (59582402-59582082)
	1-330, gnl\|xenTro1\|scaffold_252 (1556515-1556882)

	9-326, gnl\|bosTau2\|chr10 (26213136-26213457)
	9-326, gnl\|Hg17\|chr9 (128184273-128184592)
	9-326, gnl\|Mm7\|chrX (161981790-161981461)