Non-Coding RNA Search

unkn-AR045G10LN30NG10S

Sequence:


               
               CTTTTTGGTAGCTTTTCCTGCTATTCTCATTGCAGTCCTCTTGTTTTTCTCTTATCTTGC
CCAAAGAGCTCCCCCTCAAGGCCCACTCTAGGCCCCTCTTGCCTCTGTACAAGACTAAGA
AAACTGTTTGATTGTCCTTTCCATCCTGGGGTGTAGAATATTCTTGGAAGCTCCATTGAT
TTTTGTCGTCGCACCATCATCTATCTTATAAAACAATTCCAAATTAACTTTTTAAAACCA
TACCGATTTATCACTTTGTGTTTGTGATATAACACGCCTAGAACCTNNNACTGTTGTCAC
TCCTGTAATGAGGCTCCTGTCTGCTTGGGTGACNNNATGTTTGGAGACTCTTTGTNNNCT
CAATATGNNNTTNNNC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTTGGTAGCTTTTCCTGCTATTCTCATTGCAGTCCTCTTGTTTTTCTCTTATCTTGC
CCAAAGAGCTCCCCCTCAAGGCCCACTCTAGGCCCCTCTTGCCTCTGTACAAGACTAAGA
AAACTGTTTGATTGTCCTTTCCATCCTGGGGTGTAGAATATTCTTGGAAGCTCCATTGAT
TTTTGTCGTCGCACCATCATCTATCTTATAAAACAATTCCAAATTAACTTTTTAAAACCA
TACCGATTTATCACTTTGTGTTTGTGATATAACACGCCTAGAACCTNNNACTGTTGTCAC
TCCTGTAATGAGGCTCCTGTCTGCTTGGGTGACNNNATGTTTGGAGACTCTTTGTNNNCT
CAATATGNNNTTNNNC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               40-151, - strand, RNAz p=0.837142

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-151, - strand, RNAz p=0.837142

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-372, gnl|bosTau2|chr11 (52874390-52874021)
               

               
               1-372, gnl|canFam2|chr17 (24640852-24641250)
               

               
               1-372, gnl|echTel1|scaffold_290655 (20832-21211)
               

               
               1-372, gnl|hg17|chr2 (27756032-27756405)
               

               
               1-372, gnl|Hg17|chr2 (27756159-27756528)
               

               
               1-372, gnl|loxAfr1|scaffold_60307 (5595-5218)
               

               
               1-372, gnl|mm7|chr5 (30512817-30513195)
               

               
               1-372, gnl|Mm7|chr5 (30512954-30513313)
               

               
               1-372, gnl|monDom2|scaffold_1 (148582778-148582382)
               

               
               1-372, gnl|oryCun1|scaffold_208178 (40891-41282)
               

               
               1-372, gnl|panTro1|chr12 (28696911-28697282)
               

               
               1-372, gnl|rheMac2|chr13 (27602258-27602633)
               

               
               1-372, gnl|rn3|chr6 (25041584-25041206)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-372, gnl|bosTau2|chr11 (52874390-52874021)
               

               
               1-372, gnl|canFam2|chr17 (24640852-24641250)
               

               
               1-372, gnl|echTel1|scaffold_290655 (20832-21211)
               

               
               1-372, gnl|hg17|chr2 (27756032-27756405)
               

               
               1-372, gnl|Hg17|chr2 (27756159-27756528)
               

               
               1-372, gnl|loxAfr1|scaffold_60307 (5595-5218)
               

               
               1-372, gnl|mm7|chr5 (30512817-30513195)
               

               
               1-372, gnl|Mm7|chr5 (30512954-30513313)
               

               
               1-372, gnl|monDom2|scaffold_1 (148582778-148582382)
               

               
               1-372, gnl|oryCun1|scaffold_208178 (40891-41282)
               

               
               1-372, gnl|panTro1|chr12 (28696911-28697282)
               

               
               1-372, gnl|rheMac2|chr13 (27602258-27602633)
               

               
               1-372, gnl|rn3|chr6 (25041584-25041206)

	1-372, gnl\|bosTau2\|chr11 (52874390-52874021)
	1-372, gnl\|canFam2\|chr17 (24640852-24641250)
	1-372, gnl\|echTel1\|scaffold_290655 (20832-21211)
	1-372, gnl\|hg17\|chr2 (27756032-27756405)
	1-372, gnl\|Hg17\|chr2 (27756159-27756528)
	1-372, gnl\|loxAfr1\|scaffold_60307 (5595-5218)
	1-372, gnl\|mm7\|chr5 (30512817-30513195)
	1-372, gnl\|Mm7\|chr5 (30512954-30513313)
	1-372, gnl\|monDom2\|scaffold_1 (148582778-148582382)
	1-372, gnl\|oryCun1\|scaffold_208178 (40891-41282)
	1-372, gnl\|panTro1\|chr12 (28696911-28697282)
	1-372, gnl\|rheMac2\|chr13 (27602258-27602633)
	1-372, gnl\|rn3\|chr6 (25041584-25041206)