Non-Coding RNA Search

unkn-AR061E11IPBCAE11R

Sequence:


               
               GCATTGGGGGGACTCTGAGGCTAGGTGGGGCCAGCCCTATCCCAATTTCCCATCAATAGT
GTTCTCTTGCACAGAGACTGAGGAAGAACCGTGACTCACTTCCTCCCTCAGTCTGACTGT
AGAACTATTGTTCTCCCACTGTGGCTGGTGCTGCTGGATGGGGCTACCCCAGGCTGGCCC
CTAGGAGTCTGCTCCTTGTGGGAGGCANNTCCCATTCTGAGAAGGGGCCAACCGGACGTA
CCNNNCTAACCAACTTNNNNCACCCATATTCTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATTGGGGGGACTCTGAGGCTAGGTGGGGCCAGCCCTATCCCAATTTCCCATCAATAGT
GTTCTCTTGCACAGAGACTGAGGAAGAACCGTGACTCACTTCCTCCCTCAGTCTGACTGT
AGAACTATTGTTCTCCCACTGTGGCTGGTGCTGCTGGATGGGGCTACCCCAGGCTGGCCC
CTAGGAGTCTGCTCCTTGTGGGAGGCANNTCCCATTCTGAGAAGGGGCCAACCGGACGTA
CCNNNCTAACCAACTTNNNNCACCCATATTCTTTTTTTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               119-273, - strand, RNAz p=0.999695
               

               
               129-270, + strand, RNAz p=0.794687

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-273, - strand, RNAz p=0.999695
               

               
               129-270, + strand, RNAz p=0.794687

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               9-273, gnl|bosTau2|chr21 (12190844-12190564)
               

               
               9-273, gnl|canFam2|chr3 (56232306-56231983)
               

               
               9-273, gnl|dasNov1|scaffold_43581 (9410-9123)
               

               
               9-273, gnl|echTel1|scaffold_308727 (51231-50931)
               

               
               9-273, gnl|hg17|chr15 (89213927-89214218)
               

               
               9-273, gnl|Hg17|chr15 (89214073-89214316)
               

               
               9-273, gnl|loxAfr1|scaffold_34158 (9037-9343)
               

               
               9-273, gnl|mm7|chr7 (76275898-76275588)
               

               
               9-273, gnl|Mm7|chr7 (76275759-76275516)
               

               
               9-273, gnl|monDom2|scaffold_45 (9878383-9878734)
               

               
               9-273, gnl|panTro1|chr16 (90163847-90164142)
               

               
               9-273, gnl|rn3|chr1 (136304058-136303750)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-273, gnl|bosTau2|chr21 (12190844-12190564)
               

               
               9-273, gnl|canFam2|chr3 (56232306-56231983)
               

               
               9-273, gnl|dasNov1|scaffold_43581 (9410-9123)
               

               
               9-273, gnl|echTel1|scaffold_308727 (51231-50931)
               

               
               9-273, gnl|hg17|chr15 (89213927-89214218)
               

               
               9-273, gnl|Hg17|chr15 (89214073-89214316)
               

               
               9-273, gnl|loxAfr1|scaffold_34158 (9037-9343)
               

               
               9-273, gnl|mm7|chr7 (76275898-76275588)
               

               
               9-273, gnl|Mm7|chr7 (76275759-76275516)
               

               
               9-273, gnl|monDom2|scaffold_45 (9878383-9878734)
               

               
               9-273, gnl|panTro1|chr16 (90163847-90164142)
               

               
               9-273, gnl|rn3|chr1 (136304058-136303750)

	119-273, - strand, RNAz p=0.999695
	129-270, + strand, RNAz p=0.794687

	9-273, gnl\|bosTau2\|chr21 (12190844-12190564)
	9-273, gnl\|canFam2\|chr3 (56232306-56231983)
	9-273, gnl\|dasNov1\|scaffold_43581 (9410-9123)
	9-273, gnl\|echTel1\|scaffold_308727 (51231-50931)
	9-273, gnl\|hg17\|chr15 (89213927-89214218)
	9-273, gnl\|Hg17\|chr15 (89214073-89214316)
	9-273, gnl\|loxAfr1\|scaffold_34158 (9037-9343)
	9-273, gnl\|mm7\|chr7 (76275898-76275588)
	9-273, gnl\|Mm7\|chr7 (76275759-76275516)
	9-273, gnl\|monDom2\|scaffold_45 (9878383-9878734)
	9-273, gnl\|panTro1\|chr16 (90163847-90164142)
	9-273, gnl\|rn3\|chr1 (136304058-136303750)