Non-Coding RNA Search

unkn-AR065B10IBMBB10S

Sequence:


               
               GGCAGATGCCAAAGGTTTAATGGATCAAATTATTTCTGTGCTGAATTTTTATTCACCTAC
TTTCAAACAGTTGGTCTTTTACTTTAGTCCAACGTTAAAATGGAATTATAAATTTCTGTC
TTAAATGGTGTAAAATAAAACATACTAGAAATGAGTTTGGTTAACAATAATAGTTTGAGT
AATTGAAATATCTTTTTGCCTTGGCCTTTCTAGCTCCCTAAATCCTTGTTTTAATAGCAA
GTTTAACCTAGACGAGGGCATGGTAACATTTTTGTAGAAATAATGTGTGTGTGTGTTTGC
ATAGTTGTTCCTTGTCCGTTATTATAAATCATTTGCAAAAGACTTTTCTTTAGGGCCACC
ATATTTATTTAGGTTTATAATAGAACAAGGATCCTCAAAATGTGTGATGTGATGATCGTC
ACCTNNNNACCTTGNNGAAAATGCCAATNNNTGAGNNNAGNNAGCATCNAATNCAGTAGN
TCTGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGATGCCAAAGGTTTAATGGATCAAATTATTTCTGTGCTGAATTTTTATTCACCTAC
TTTCAAACAGTTGGTCTTTTACTTTAGTCCAACGTTAAAATGGAATTATAAATTTCTGTC
TTAAATGGTGTAAAATAAAACATACTAGAAATGAGTTTGGTTAACAATAATAGTTTGAGT
AATTGAAATATCTTTTTGCCTTGGCCTTTCTAGCTCCCTAAATCCTTGTTTTAATAGCAA
GTTTAACCTAGACGAGGGCATGGTAACATTTTTGTAGAAATAATGTGTGTGTGTGTTTGC
ATAGTTGTTCCTTGTCCGTTATTATAAATCATTTGCAAAAGACTTTTCTTTAGGGCCACC
ATATTTATTTAGGTTTATAATAGAACAAGGATCCTCAAAATGTGTGATGTGATGATCGTC
ACCTNNNNACCTTGNNGAAAATGCCAATNNNTGAGNNNAGNNAGCATCNAATNCAGTAGN
TCTGAAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               310-421, - strand, RNAz p=0.955768

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               310-421, - strand, RNAz p=0.955768

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-434, gnl|bosTau2|chr3 (37140275-37140716)
               

               
               1-434, gnl|canFam2|chr6 (55425681-55425209)
               

               
               1-434, gnl|echTel1|scaffold_316730 (44724-44233)
               

               
               1-434, gnl|hg17|chr1 (97470171-97470717)
               

               
               1-434, gnl|Hg17|chr1 (97470608-97470171)
               

               
               1-434, gnl|loxAfr1|scaffold_28123 (5241-4780)
               

               
               1-434, gnl|mm7|chr3 (118978630-118978187)
               

               
               1-434, gnl|Mm7|chr3 (118978286-118978683)
               

               
               1-434, gnl|oryCun1|scaffold_58867 (1489-1919)
               

               
               1-434, gnl|panTro1|chr1 (96486330-96486873)
               

               
               1-434, gnl|rheMac2|chr1 (100348513-100349034)
               

               
               1-434, gnl|rn3|chr2 (215545994-215545548)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-434, gnl|bosTau2|chr3 (37140275-37140716)
               

               
               1-434, gnl|canFam2|chr6 (55425681-55425209)
               

               
               1-434, gnl|echTel1|scaffold_316730 (44724-44233)
               

               
               1-434, gnl|hg17|chr1 (97470171-97470717)
               

               
               1-434, gnl|Hg17|chr1 (97470608-97470171)
               

               
               1-434, gnl|loxAfr1|scaffold_28123 (5241-4780)
               

               
               1-434, gnl|mm7|chr3 (118978630-118978187)
               

               
               1-434, gnl|Mm7|chr3 (118978286-118978683)
               

               
               1-434, gnl|oryCun1|scaffold_58867 (1489-1919)
               

               
               1-434, gnl|panTro1|chr1 (96486330-96486873)
               

               
               1-434, gnl|rheMac2|chr1 (100348513-100349034)
               

               
               1-434, gnl|rn3|chr2 (215545994-215545548)

	1-434, gnl\|bosTau2\|chr3 (37140275-37140716)
	1-434, gnl\|canFam2\|chr6 (55425681-55425209)
	1-434, gnl\|echTel1\|scaffold_316730 (44724-44233)
	1-434, gnl\|hg17\|chr1 (97470171-97470717)
	1-434, gnl\|Hg17\|chr1 (97470608-97470171)
	1-434, gnl\|loxAfr1\|scaffold_28123 (5241-4780)
	1-434, gnl\|mm7\|chr3 (118978630-118978187)
	1-434, gnl\|Mm7\|chr3 (118978286-118978683)
	1-434, gnl\|oryCun1\|scaffold_58867 (1489-1919)
	1-434, gnl\|panTro1\|chr1 (96486330-96486873)
	1-434, gnl\|rheMac2\|chr1 (100348513-100349034)
	1-434, gnl\|rn3\|chr2 (215545994-215545548)