Non-Coding RNA Search

unkn-AR070E05iSPAE05S

Sequence:


               
               AGAGTATGAAGCAGTTGTGGATCGCTGTGCCCAGCCACACCCCTTGCCCCATCCCGGCTC
CGTCACCCTCCCGCCCCCCACACTCAGGACAAGAATGCCCTGCCCGGAACAGCCCAGCAG
CGCCTAGATGGCTTTGGTCACGGTCCAGCGGTCGCCTACCCCCAGCACTACCTCCAGCCC
CTGCGCCTCGAGCTCTCATTTGGAAGACAGTGAATCCGCAGCATTACTTTGCTGTGAATG
TGAAGAATCAGAAATCTTTAGTGATTCCAATGAGGCAGACAGTGGGGAGGAGGAATGCCG
ATCACAGCCCAGGAGCATCAGTGAGAGTTTTCTAACTGTCAAAGGTGCTNNCCTTTTTCT
ACCACGGGGAAATGGCTCATCCACACCAAGAATCAGCCACAGACGCAATAAGCATGCANN
NNATCTTCAACAGCATCNNNNNGCAATNNNCATATTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGTATGAAGCAGTTGTGGATCGCTGTGCCCAGCCACACCCCTTGCCCCATCCCGGCTC
CGTCACCCTCCCGCCCCCCACACTCAGGACAAGAATGCCCTGCCCGGAACAGCCCAGCAG
CGCCTAGATGGCTTTGGTCACGGTCCAGCGGTCGCCTACCCCCAGCACTACCTCCAGCCC
CTGCGCCTCGAGCTCTCATTTGGAAGACAGTGAATCCGCAGCATTACTTTGCTGTGAATG
TGAAGAATCAGAAATCTTTAGTGATTCCAATGAGGCAGACAGTGGGGAGGAGGAATGCCG
ATCACAGCCCAGGAGCATCAGTGAGAGTTTTCTAACTGTCAAAGGTGCTNNCCTTTTTCT
ACCACGGGGAAATGGCTCATCCACACCAAGAATCAGCCACAGACGCAATAAGCATGCANN
NNATCTTCAACAGCATCNNNNNGCAATNNNCATATTAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5SW74_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5SW74_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               35-128, - strand, RNAz p=0.604512

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               35-128, - strand, RNAz p=0.604512

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               35-190, gnl|bosTau2|chr19 (15544112-15543955)
               

               
               35-190, gnl|canFam2|chr9 (47290378-47290579)
               

               
               35-190, gnl|dasNov1|scaffold_36215 (13554-13755)
               

               
               35-190, gnl|hg17|chr17 (25280993-25281194)
               

               
               35-190, gnl|Hg17|chr17 (25281237-25281082)
               

               
               35-190, gnl|mm7|chr11 (77298179-77297980)
               

               
               35-190, gnl|Mm7|chr11 (77297933-77298090)
               

               
               35-190, gnl|monDom2|scaffold_86 (334049-334245)
               

               
               35-190, gnl|oryCun1|scaffold_196539 (903-1104)
               

               
               35-190, gnl|rn3|chr10 (66887033-66886833)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-190, gnl|bosTau2|chr19 (15544112-15543955)
               

               
               35-190, gnl|canFam2|chr9 (47290378-47290579)
               

               
               35-190, gnl|dasNov1|scaffold_36215 (13554-13755)
               

               
               35-190, gnl|hg17|chr17 (25280993-25281194)
               

               
               35-190, gnl|Hg17|chr17 (25281237-25281082)
               

               
               35-190, gnl|mm7|chr11 (77298179-77297980)
               

               
               35-190, gnl|Mm7|chr11 (77297933-77298090)
               

               
               35-190, gnl|monDom2|scaffold_86 (334049-334245)
               

               
               35-190, gnl|oryCun1|scaffold_196539 (903-1104)
               

               
               35-190, gnl|rn3|chr10 (66887033-66886833)

	35-190, gnl\|bosTau2\|chr19 (15544112-15543955)
	35-190, gnl\|canFam2\|chr9 (47290378-47290579)
	35-190, gnl\|dasNov1\|scaffold_36215 (13554-13755)
	35-190, gnl\|hg17\|chr17 (25280993-25281194)
	35-190, gnl\|Hg17\|chr17 (25281237-25281082)
	35-190, gnl\|mm7\|chr11 (77298179-77297980)
	35-190, gnl\|Mm7\|chr11 (77297933-77298090)
	35-190, gnl\|monDom2\|scaffold_86 (334049-334245)
	35-190, gnl\|oryCun1\|scaffold_196539 (903-1104)
	35-190, gnl\|rn3\|chr10 (66887033-66886833)