Non-Coding RNA Search

unkn-AR071C11iSPBC11S

Sequence:


               
               GATGGTCCTAGAGTGGTAAAGAAGGTAGGATAAAATAATGCAGGGCAGGAGAAATCCATG
AACTAAAACAAACAGATGTGGTATTGCTTGTTTTTCTTTGAATCATGGAATCTTCTTAGA
TACAGCAGCTCATGAAATTCCAATGCTTTTCTTCCCATTTGGAGAAGTTTCGTCTATTGT
TCCCCATATTGTTGCTCTTGCACAATGCTTACCAGTCTTCTTGCCTCTCTAGAACAAACT
AAGTTTATTTTTGTCACCAAACAAGTTGCATATTGTTTGCAACTACACCAAATAATGTCT
TAGGATATTTACTTTTTCAATAAACATTTTTTCTAGAGTTAATAATTTTCTTGTATTTTT
TCTCATTTATCAGTAGTTAATTTCCCCCCAAGTGCTCTAAAGCCTAGAAATAATTTCTAT
AACTCCCTAGCACATTAAATAATCTTCTTCCCCTTTTATCTCCCAGAGCTTTTTCCTATA
CTCTNNNCTTACTCCAGTCTNNNNNATNCTATTTAATTCTGGCTCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGTCCTAGAGTGGTAAAGAAGGTAGGATAAAATAATGCAGGGCAGGAGAAATCCATG
AACTAAAACAAACAGATGTGGTATTGCTTGTTTTTCTTTGAATCATGGAATCTTCTTAGA
TACAGCAGCTCATGAAATTCCAATGCTTTTCTTCCCATTTGGAGAAGTTTCGTCTATTGT
TCCCCATATTGTTGCTCTTGCACAATGCTTACCAGTCTTCTTGCCTCTCTAGAACAAACT
AAGTTTATTTTTGTCACCAAACAAGTTGCATATTGTTTGCAACTACACCAAATAATGTCT
TAGGATATTTACTTTTTCAATAAACATTTTTTCTAGAGTTAATAATTTTCTTGTATTTTT
TCTCATTTATCAGTAGTTAATTTCCCCCCAAGTGCTCTAAAGCCTAGAAATAATTTCTAT
AACTCCCTAGCACATTAAATAATCTTCTTCCCCTTTTATCTCCCAGAGCTTTTTCCTATA
CTCTNNNCTTACTCCAGTCTNNNNNATNCTATTTAATTCTGGCTCACA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               45-151, + strand, RNAz p=0.849398

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-151, + strand, RNAz p=0.849398

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               6-261, gnl|bosTau2|chr1 (66769930-66770187)
               

               
               6-261, gnl|canFam2|chr34 (35994552-35994808)
               

               
               6-261, gnl|dasNov1|scaffold_70509 (4773-5024)
               

               
               6-261, gnl|echTel1|scaffold_309170 (125756-125437)
               

               
               6-261, gnl|hg17|chr3 (169439094-169439342)
               

               
               6-261, gnl|loxAfr1|scaffold_17325 (54395-54135)
               

               
               6-261, gnl|mm7|chr3 (28871627-28871890)
               

               
               6-261, gnl|monDom2|scaffold_21 (4382672-4382405)
               

               
               6-261, gnl|oryCun1|scaffold_158798 (5883-6148)
               

               
               6-261, gnl|panTro1|chr2 (172924229-172924478)
               

               
               6-261, gnl|rheMac2|chr2 (118854192-118853942)
               

               
               6-261, gnl|rn3|chr2 (113672639-113672900)
               


               
               284-474, gnl|bosTau2|chr1 (66771321-66771517)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-261, gnl|bosTau2|chr1 (66769930-66770187)
               

               
               6-261, gnl|canFam2|chr34 (35994552-35994808)
               

               
               6-261, gnl|dasNov1|scaffold_70509 (4773-5024)
               

               
               6-261, gnl|echTel1|scaffold_309170 (125756-125437)
               

               
               6-261, gnl|hg17|chr3 (169439094-169439342)
               

               
               6-261, gnl|loxAfr1|scaffold_17325 (54395-54135)
               

               
               6-261, gnl|mm7|chr3 (28871627-28871890)
               

               
               6-261, gnl|monDom2|scaffold_21 (4382672-4382405)
               

               
               6-261, gnl|oryCun1|scaffold_158798 (5883-6148)
               

               
               6-261, gnl|panTro1|chr2 (172924229-172924478)
               

               
               6-261, gnl|rheMac2|chr2 (118854192-118853942)
               

               
               6-261, gnl|rn3|chr2 (113672639-113672900)
               


               
               284-474, gnl|bosTau2|chr1 (66771321-66771517)

	6-261, gnl\|bosTau2\|chr1 (66769930-66770187)
	6-261, gnl\|canFam2\|chr34 (35994552-35994808)
	6-261, gnl\|dasNov1\|scaffold_70509 (4773-5024)
	6-261, gnl\|echTel1\|scaffold_309170 (125756-125437)
	6-261, gnl\|hg17\|chr3 (169439094-169439342)
	6-261, gnl\|loxAfr1\|scaffold_17325 (54395-54135)
	6-261, gnl\|mm7\|chr3 (28871627-28871890)
	6-261, gnl\|monDom2\|scaffold_21 (4382672-4382405)
	6-261, gnl\|oryCun1\|scaffold_158798 (5883-6148)
	6-261, gnl\|panTro1\|chr2 (172924229-172924478)
	6-261, gnl\|rheMac2\|chr2 (118854192-118853942)
	6-261, gnl\|rn3\|chr2 (113672639-113672900)

	284-474, gnl\|bosTau2\|chr1 (66771321-66771517)