Non-Coding RNA Search

unkn-AR073H03IBMBH03T

Sequence:


               
               TNNNAGAAGGGAAACAGNNNAAGAACTCAGCTTGTGGAAGCTTCCAGTGCTGTAGAGGCA
AATGCTAAATGAGAAAGCTGACCCTAATTCAGAGTCCTTTCCTGNNAGGGTTCACACATT
TTCCCCCCAGGCAATAAGCACTGTAACCTAAGAGGAAGGAAAGAGATCCACACCTTCCCC
AAAGAAAAGGAAGATGGATCTCGTGTCAGGCTCCATTAGACCCACTTGCGCCAGCTCTCC
AAGGAGGAACAATGCCGCTTTTGTGATAGGCCCCAGCAGCGAGTTTGGAAACTTTACAAA
ACAATCTTACCCAAGAGAAACCTGGTTCCAGCTCTCTTCCTGGAAAGAGGTGTTGATCCA
AGAAAGTTTAATGCTGCTCTTATCAGCTCTTCCTGGGATCAGTGTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TNNNAGAAGGGAAACAGNNNAAGAACTCAGCTTGTGGAAGCTTCCAGTGCTGTAGAGGCA
AATGCTAAATGAGAAAGCTGACCCTAATTCAGAGTCCTTTCCTGNNAGGGTTCACACATT
TTCCCCCCAGGCAATAAGCACTGTAACCTAAGAGGAAGGAAAGAGATCCACACCTTCCCC
AAAGAAAAGGAAGATGGATCTCGTGTCAGGCTCCATTAGACCCACTTGCGCCAGCTCTCC
AAGGAGGAACAATGCCGCTTTTGTGATAGGCCCCAGCAGCGAGTTTGGAAACTTTACAAA
ACAATCTTACCCAAGAGAAACCTGGTTCCAGCTCTCTTCCTGGAAAGAGGTGTTGATCCA
AGAAAGTTTAATGCTGCTCTTATCAGCTCTTCCTGGGATCAGTGTTA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               124-242, - strand, RNAz p=0.827197
               

               
               307-407, + strand, RNAz p=0.998955

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               124-242, - strand, RNAz p=0.827197
               

               
               307-407, + strand, RNAz p=0.998955

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               49-407, gnl|bosTau2|chr5 (65214284-65213925)
               

               
               49-407, gnl|Hg17|chr12 (1569501-1569880)
               

               
               49-407, gnl|Mm7|chr6 (119508935-119508615)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-407, gnl|bosTau2|chr5 (65214284-65213925)
               

               
               49-407, gnl|Hg17|chr12 (1569501-1569880)
               

               
               49-407, gnl|Mm7|chr6 (119508935-119508615)

	124-242, - strand, RNAz p=0.827197
	307-407, + strand, RNAz p=0.998955

	49-407, gnl\|bosTau2\|chr5 (65214284-65213925)
	49-407, gnl\|Hg17\|chr12 (1569501-1569880)
	49-407, gnl\|Mm7\|chr6 (119508935-119508615)