Non-Coding RNA Search

unkn-AR075A06iTHYDA07S

Sequence:


               
               GAGAGGACCTGGACCCCAACAGTGACCACTGCAGAGTATAGAGTATGACTGCGGAACTCA
TTTAGATTAGACAGTCACAGCGAGACCATGTGATAAGTAGCTTTTGATAGCACATCATTT
CAAATATTTGCTTCTGAATTTATCCCATTTTCCAAAGAAGTGGCCAGATCCTTAGTGATT
TCCTGTTCACAGCAGAGAGCAGACATGCTCAGAACCAACCCTACTCCCTGTTTGAAGAGC
AGGCGAGGGAGAGAGAGGAGGAGCTTCTTAGGAGTAGTTGAAGTCTGTTCCCCAGTTTCC
AGTGGTACCCAGGGAGATGGTGAACTTCAGAGGCTCCCGGTTTGGGGGTTCCCTGAAGAA
AATTGAGTCATCCTGGGTCTTTCAGCCTNNGCAGAGACCCCCCAAGCACTNNGNCCACCN
NNCNNNNNGGCCCATCNNNG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGGACCTGGACCCCAACAGTGACCACTGCAGAGTATAGAGTATGACTGCGGAACTCA
TTTAGATTAGACAGTCACAGCGAGACCATGTGATAAGTAGCTTTTGATAGCACATCATTT
CAAATATTTGCTTCTGAATTTATCCCATTTTCCAAAGAAGTGGCCAGATCCTTAGTGATT
TCCTGTTCACAGCAGAGAGCAGACATGCTCAGAACCAACCCTACTCCCTGTTTGAAGAGC
AGGCGAGGGAGAGAGAGGAGGAGCTTCTTAGGAGTAGTTGAAGTCTGTTCCCCAGTTTCC
AGTGGTACCCAGGGAGATGGTGAACTTCAGAGGCTCCCGGTTTGGGGGTTCCCTGAAGAA
AATTGAGTCATCCTGGGTCTTTCAGCCTNNGCAGAGACCCCCCAAGCACTNNGNCCACCN
NNCNNNNNGGCCCATCNNNG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               146-290, - strand, RNAz p=0.998983

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               146-290, - strand, RNAz p=0.998983

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               1-440, gnl|bosTau2|chr1 (88244379-88243947)
               

               
               1-440, gnl|canFam2|chr23 (34293935-34294489)
               

               
               1-440, gnl|dasNov1|scaffold_13798 (14128-13586)
               

               
               1-440, gnl|hg17|chr3 (135677230-135677791)
               

               
               1-440, gnl|Hg17|chr3 (135677753-135677295)
               

               
               1-440, gnl|oryCun1|scaffold_158220 (4633-4133)
               

               
               1-440, gnl|panTro1|chr2_random (13043086-13043647)
               

               
               1-440, gnl|rheMac2|chr2 (153275826-153275268)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-440, gnl|bosTau2|chr1 (88244379-88243947)
               

               
               1-440, gnl|canFam2|chr23 (34293935-34294489)
               

               
               1-440, gnl|dasNov1|scaffold_13798 (14128-13586)
               

               
               1-440, gnl|hg17|chr3 (135677230-135677791)
               

               
               1-440, gnl|Hg17|chr3 (135677753-135677295)
               

               
               1-440, gnl|oryCun1|scaffold_158220 (4633-4133)
               

               
               1-440, gnl|panTro1|chr2_random (13043086-13043647)
               

               
               1-440, gnl|rheMac2|chr2 (153275826-153275268)

	1-440, gnl\|bosTau2\|chr1 (88244379-88243947)
	1-440, gnl\|canFam2\|chr23 (34293935-34294489)
	1-440, gnl\|dasNov1\|scaffold_13798 (14128-13586)
	1-440, gnl\|hg17\|chr3 (135677230-135677791)
	1-440, gnl\|Hg17\|chr3 (135677753-135677295)
	1-440, gnl\|oryCun1\|scaffold_158220 (4633-4133)
	1-440, gnl\|panTro1\|chr2_random (13043086-13043647)
	1-440, gnl\|rheMac2\|chr2 (153275826-153275268)