Non-Coding RNA Search

unkn-AR078A08iTHYEA08R

Sequence:


               
               AGGAAATGCAAAGGTTTACAGAGTTTGCTATTTTTTTCTACTTCTGGATTTTAAAATTTA
TTCTTATATAGAAAGCTTAAAGTTTCATGCAGAGTGATTCCTGTCATAGCAGAAACCACT
GTTACTTTAGCATTTAGCACTAAGATATCATAGAAAGGTACATTTTTCTCTCTAGTGCTA
TTGTGAAAAATGAAGCATAATTTGCTATGTATTTTTCTTATTTTCATCTTTTCAGTGTTG
ACTTCAAACCATTGCGATGAGAAACTANGNCATGNAGAAAGCTGTAGTTGCACTTTGATG
ACTCACANGNTAAATGTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAAATGCAAAGGTTTACAGAGTTTGCTATTTTTTTCTACTTCTGGATTTTAAAATTTA
TTCTTATATAGAAAGCTTAAAGTTTCATGCAGAGTGATTCCTGTCATAGCAGAAACCACT
GTTACTTTAGCATTTAGCACTAAGATATCATAGAAAGGTACATTTTTCTCTCTAGTGCTA
TTGTGAAAAATGAAGCATAATTTGCTATGTATTTTTCTTATTTTCATCTTTTCAGTGTTG
ACTTCAAACCATTGCGATGAGAAACTANGNCATGNAGAAAGCTGTAGTTGCACTTTGATG
ACTCACANGNTAAATGTGAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               82-240, + strand, RNAz p=0.978944
               

               
               152-254, - strand, RNAz p=0.797736

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-240, + strand, RNAz p=0.978944
               

               
               152-254, - strand, RNAz p=0.797736

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               3-320, gnl|bosTau2|chr4 (28002756-28003073)
               

               
               3-320, gnl|canFam2|chr14 (55326102-55326414)
               

               
               3-320, gnl|dasNov1|scaffold_44434 (9888-10210)
               

               
               3-320, gnl|echTel1|scaffold_280877 (48210-47894)
               

               
               3-320, gnl|galGal2|chr1 (23768414-23768084)
               

               
               3-320, gnl|hg17|chr7 (112055292-112055609)
               

               
               3-320, gnl|Hg17|chr7 (112055644-112055337)
               

               
               3-320, gnl|mm7|chr6 (13569060-13569369)
               

               
               3-320, gnl|Mm7|chr6 (13569403-13569101)
               

               
               3-320, gnl|monDom2|scaffold_22 (37598554-37598213)
               

               
               3-320, gnl|oryCun1|scaffold_176892 (139988-140329)
               

               
               3-320, gnl|panTro1|chr6 (114076327-114076644)
               

               
               3-320, gnl|rheMac2|chr3 (150208245-150208562)
               

               
               3-320, gnl|rn3|chr4 (39181972-39182278)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-320, gnl|bosTau2|chr4 (28002756-28003073)
               

               
               3-320, gnl|canFam2|chr14 (55326102-55326414)
               

               
               3-320, gnl|dasNov1|scaffold_44434 (9888-10210)
               

               
               3-320, gnl|echTel1|scaffold_280877 (48210-47894)
               

               
               3-320, gnl|galGal2|chr1 (23768414-23768084)
               

               
               3-320, gnl|hg17|chr7 (112055292-112055609)
               

               
               3-320, gnl|Hg17|chr7 (112055644-112055337)
               

               
               3-320, gnl|mm7|chr6 (13569060-13569369)
               

               
               3-320, gnl|Mm7|chr6 (13569403-13569101)
               

               
               3-320, gnl|monDom2|scaffold_22 (37598554-37598213)
               

               
               3-320, gnl|oryCun1|scaffold_176892 (139988-140329)
               

               
               3-320, gnl|panTro1|chr6 (114076327-114076644)
               

               
               3-320, gnl|rheMac2|chr3 (150208245-150208562)
               

               
               3-320, gnl|rn3|chr4 (39181972-39182278)

	82-240, + strand, RNAz p=0.978944
	152-254, - strand, RNAz p=0.797736

	3-320, gnl\|bosTau2\|chr4 (28002756-28003073)
	3-320, gnl\|canFam2\|chr14 (55326102-55326414)
	3-320, gnl\|dasNov1\|scaffold_44434 (9888-10210)
	3-320, gnl\|echTel1\|scaffold_280877 (48210-47894)
	3-320, gnl\|galGal2\|chr1 (23768414-23768084)
	3-320, gnl\|hg17\|chr7 (112055292-112055609)
	3-320, gnl\|Hg17\|chr7 (112055644-112055337)
	3-320, gnl\|mm7\|chr6 (13569060-13569369)
	3-320, gnl\|Mm7\|chr6 (13569403-13569101)
	3-320, gnl\|monDom2\|scaffold_22 (37598554-37598213)
	3-320, gnl\|oryCun1\|scaffold_176892 (139988-140329)
	3-320, gnl\|panTro1\|chr6 (114076327-114076644)
	3-320, gnl\|rheMac2\|chr3 (150208245-150208562)
	3-320, gnl\|rn3\|chr4 (39181972-39182278)