Non-Coding RNA Search

unkn-AR083A05SPAA05S

Sequence:


               
               CACGTGCATCTCGCATGTTCCACTGGAACACGTTCTTTTCTCAAAGGATGAAAGATCTGC
CTTCATGGTCACGTAATTTCCCAGAGGAGCCTCCTCGGGGCCCTTGAACGCTGGGTAGAA
GGCTTAACCCTCTCTGAATTACTCAGTTCAGAGTATGTCCTTTTTCCCCTGCAATTAATT
CAAGCCTTCCTTCCTCCTGCGAAGATCTAGAGAGAGTGGTGCTGACCTACGTGAAAGCCA
TCAGCAGTGGGGACCTGCCCTGTGTGGAGAACACAGTCCTGGCCTTGGCGCAGGTTAAGA
ACTCGGCTGCAATGAAAACGGCCATTNNCCACTATGACCAGCTGATGGGCCAGAATCTGC
ACCTGCCCACAGAGNCNCNNNNNNAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGTGCATCTCGCATGTTCCACTGGAACACGTTCTTTTCTCAAAGGATGAAAGATCTGC
CTTCATGGTCACGTAATTTCCCAGAGGAGCCTCCTCGGGGCCCTTGAACGCTGGGTAGAA
GGCTTAACCCTCTCTGAATTACTCAGTTCAGAGTATGTCCTTTTTCCCCTGCAATTAATT
CAAGCCTTCCTTCCTCCTGCGAAGATCTAGAGAGAGTGGTGCTGACCTACGTGAAAGCCA
TCAGCAGTGGGGACCTGCCCTGTGTGGAGAACACAGTCCTGGCCTTGGCGCAGGTTAAGA
ACTCGGCTGCAATGAAAACGGCCATTNNCCACTATGACCAGCTGATGGGCCAGAATCTGC
ACCTGCCCACAGAGNCNCNNNNNNAGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               225-338, - strand, RNAz p=0.509053
               

               
               242-361, - strand, RNAz p=0.594118

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               225-338, - strand, RNAz p=0.509053
               

               
               242-361, - strand, RNAz p=0.594118

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               203-386, gnl|bosTau2|chr3 (40074143-40074326)
               

               
               203-386, gnl|canFam2|chr6 (62449858-62449548)
               

               
               203-386, gnl|danRer3|chr19 (35641297-35641014)
               

               
               203-386, gnl|dasNov1|scaffold_53410 (35918-35607)
               

               
               203-386, gnl|echTel1|scaffold_277203 (33229-33538)
               

               
               203-386, gnl|hg17|chr1 (89189441-89189752)
               

               
               203-386, gnl|Hg17|chr1 (89189733-89189550)
               

               
               203-386, gnl|loxAfr1|scaffold_158 (128847-129157)
               

               
               203-386, gnl|mm7|chr3 (142555648-142555337)
               

               
               203-386, gnl|Mm7|chr3 (142555354-142555537)
               

               
               203-386, gnl|monDom2|scaffold_87 (4880442-4880131)
               

               
               203-386, gnl|oryCun1|scaffold_193509 (5995-6306)
               

               
               203-386, gnl|panTro1|chr1 (87992513-87992824)
               

               
               203-386, gnl|rheMac2|chr1 (91761599-91761910)
               

               
               203-386, gnl|rn3|chr2 (240667067-240666775)
               

               
               203-386, gnl|xenTro1|scaffold_496 (65581-65266)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               203-386, gnl|bosTau2|chr3 (40074143-40074326)
               

               
               203-386, gnl|canFam2|chr6 (62449858-62449548)
               

               
               203-386, gnl|danRer3|chr19 (35641297-35641014)
               

               
               203-386, gnl|dasNov1|scaffold_53410 (35918-35607)
               

               
               203-386, gnl|echTel1|scaffold_277203 (33229-33538)
               

               
               203-386, gnl|hg17|chr1 (89189441-89189752)
               

               
               203-386, gnl|Hg17|chr1 (89189733-89189550)
               

               
               203-386, gnl|loxAfr1|scaffold_158 (128847-129157)
               

               
               203-386, gnl|mm7|chr3 (142555648-142555337)
               

               
               203-386, gnl|Mm7|chr3 (142555354-142555537)
               

               
               203-386, gnl|monDom2|scaffold_87 (4880442-4880131)
               

               
               203-386, gnl|oryCun1|scaffold_193509 (5995-6306)
               

               
               203-386, gnl|panTro1|chr1 (87992513-87992824)
               

               
               203-386, gnl|rheMac2|chr1 (91761599-91761910)
               

               
               203-386, gnl|rn3|chr2 (240667067-240666775)
               

               
               203-386, gnl|xenTro1|scaffold_496 (65581-65266)

	225-338, - strand, RNAz p=0.509053
	242-361, - strand, RNAz p=0.594118

	203-386, gnl\|bosTau2\|chr3 (40074143-40074326)
	203-386, gnl\|canFam2\|chr6 (62449858-62449548)
	203-386, gnl\|danRer3\|chr19 (35641297-35641014)
	203-386, gnl\|dasNov1\|scaffold_53410 (35918-35607)
	203-386, gnl\|echTel1\|scaffold_277203 (33229-33538)
	203-386, gnl\|hg17\|chr1 (89189441-89189752)
	203-386, gnl\|Hg17\|chr1 (89189733-89189550)
	203-386, gnl\|loxAfr1\|scaffold_158 (128847-129157)
	203-386, gnl\|mm7\|chr3 (142555648-142555337)
	203-386, gnl\|Mm7\|chr3 (142555354-142555537)
	203-386, gnl\|monDom2\|scaffold_87 (4880442-4880131)
	203-386, gnl\|oryCun1\|scaffold_193509 (5995-6306)
	203-386, gnl\|panTro1\|chr1 (87992513-87992824)
	203-386, gnl\|rheMac2\|chr1 (91761599-91761910)
	203-386, gnl\|rn3\|chr2 (240667067-240666775)
	203-386, gnl\|xenTro1\|scaffold_496 (65581-65266)