Non-Coding RNA Search

unkn-AR087G04PBCCG04S

Sequence:


               
               CNNNNNNNNNGATCCCTTGTTTTAAAAAAAAAAANNNAAAAAACCCAAAAACCTGAAAAA
CAATTATAATCCCTCAACTTGCATCCACAATGACAGGGATAAACTTAAAAAGCAGCATAA
TCATATCCTAAAGTATTAGCTTTCCCTGCCCCACCCTTAACAGGTTAATTGCTAAAAAGA
GTTCCTGCTGTGGCGCAGTGGGTTAAGAACCTGACTGCAGCAGTGCAGATCACAGGTTCA
ATCCCTGGCCCATTGTAGTGGGTTAATGGATCTGGTGTTGCCACAACTGCAATGTAGGTT
GCAACTGCAGCTCAGATGTGACTCCCAACCCAAGAACTCCATATACCGCGCGCGGGTGGT
CA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CNNNNNNNNNGATCCCTTGTTTTAAAAAAAAAAANNNAAAAAACCCAAAAACCTGAAAAA
CAATTATAATCCCTCAACTTGCATCCACAATGACAGGGATAAACTTAAAAAGCAGCATAA
TCATATCCTAAAGTATTAGCTTTCCCTGCCCCACCCTTAACAGGTTAATTGCTAAAAAGA
GTTCCTGCTGTGGCGCAGTGGGTTAAGAACCTGACTGCAGCAGTGCAGATCACAGGTTCA
ATCCCTGGCCCATTGTAGTGGGTTAATGGATCTGGTGTTGCCACAACTGCAATGTAGGTT
GCAACTGCAGCTCAGATGTGACTCCCAACCCAAGAACTCCATATACCGCGCGCGGGTGGT
CA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               11-126, - strand, RNAz p=0.649203
               

               
               37-184, - strand, RNAz p=0.799129

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               11-126, - strand, RNAz p=0.649203
               

               
               37-184, - strand, RNAz p=0.799129

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of BX538317, -
               

               
               5' of BX538317, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX538317, -
               

               
               5' of BX538317, -

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               11-184, gnl|bosTau2|chr16 (42764385-42764552)
               

               
               11-184, gnl|canFam2|chr7 (23696084-23695864)
               

               
               11-184, gnl|dasNov1|scaffold_203480 (315-101)
               

               
               11-184, gnl|echTel1|scaffold_233083 (14001-14226)
               

               
               11-184, gnl|hg17|chr1 (175805982-175806204)
               

               
               11-184, gnl|Hg17|chr1 (175806093-175806263)
               

               
               11-184, gnl|loxAfr1|scaffold_3229 (53163-53388)
               

               
               11-184, gnl|mm7|chr1 (156607551-156607347)
               

               
               11-184, gnl|Mm7|chr1 (156607454-156607290)
               

               
               11-184, gnl|monDom2|scaffold_16 (31849519-31849776)
               

               
               11-184, gnl|oryCun1|scaffold_128767 (3636-3871)
               

               
               11-184, gnl|panTro1|chr1 (158198630-158198845)
               

               
               11-184, gnl|rheMac2|chr1 (191634616-191634395)
               

               
               11-184, gnl|rn3|chr13 (71855940-71855747)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-184, gnl|bosTau2|chr16 (42764385-42764552)
               

               
               11-184, gnl|canFam2|chr7 (23696084-23695864)
               

               
               11-184, gnl|dasNov1|scaffold_203480 (315-101)
               

               
               11-184, gnl|echTel1|scaffold_233083 (14001-14226)
               

               
               11-184, gnl|hg17|chr1 (175805982-175806204)
               

               
               11-184, gnl|Hg17|chr1 (175806093-175806263)
               

               
               11-184, gnl|loxAfr1|scaffold_3229 (53163-53388)
               

               
               11-184, gnl|mm7|chr1 (156607551-156607347)
               

               
               11-184, gnl|Mm7|chr1 (156607454-156607290)
               

               
               11-184, gnl|monDom2|scaffold_16 (31849519-31849776)
               

               
               11-184, gnl|oryCun1|scaffold_128767 (3636-3871)
               

               
               11-184, gnl|panTro1|chr1 (158198630-158198845)
               

               
               11-184, gnl|rheMac2|chr1 (191634616-191634395)
               

               
               11-184, gnl|rn3|chr13 (71855940-71855747)

	11-126, - strand, RNAz p=0.649203
	37-184, - strand, RNAz p=0.799129

	11-184, gnl\|bosTau2\|chr16 (42764385-42764552)
	11-184, gnl\|canFam2\|chr7 (23696084-23695864)
	11-184, gnl\|dasNov1\|scaffold_203480 (315-101)
	11-184, gnl\|echTel1\|scaffold_233083 (14001-14226)
	11-184, gnl\|hg17\|chr1 (175805982-175806204)
	11-184, gnl\|Hg17\|chr1 (175806093-175806263)
	11-184, gnl\|loxAfr1\|scaffold_3229 (53163-53388)
	11-184, gnl\|mm7\|chr1 (156607551-156607347)
	11-184, gnl\|Mm7\|chr1 (156607454-156607290)
	11-184, gnl\|monDom2\|scaffold_16 (31849519-31849776)
	11-184, gnl\|oryCun1\|scaffold_128767 (3636-3871)
	11-184, gnl\|panTro1\|chr1 (158198630-158198845)
	11-184, gnl\|rheMac2\|chr1 (191634616-191634395)
	11-184, gnl\|rn3\|chr13 (71855940-71855747)