Non-Coding RNA Search

unkn-CTK602768874.R1

Sequence:


               
               TTTTTTTATCTCTGTTTCATTTGCCTTCTACAAAACTAATCTCTCCCCAGTTTTTTTTGC
CCTCCACTCAGTTGGTAGAGAACCACGTTTGACCATTTTGAAACACTTAACATTTAACAC
AAACCACATGGCCATACGTTTTAATTACTTCCCACTACACAAATGGTTCCGTTTTTAGAA
AAATCAAAATCCTGTACGCCACCTCTTGCTCTCCTTCTCGCCAGCGTGTCTCTGTTTGAC
TGGCCTGGTGGTGTTCTCCCATCCTGCCCTGGTGCTGTCGGAGACCACGGCACCTGCCAA
TAAAAGTGATGACAGACCTGGACCCTCACCCAGGTTTCCAACAATGGAGTTCACTTCATA
ATCACCAGAGTTCAGCCGGTAAGCCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTATCTCTGTTTCATTTGCCTTCTACAAAACTAATCTCTCCCCAGTTTTTTTTGC
CCTCCACTCAGTTGGTAGAGAACCACGTTTGACCATTTTGAAACACTTAACATTTAACAC
AAACCACATGGCCATACGTTTTAATTACTTCCCACTACACAAATGGTTCCGTTTTTAGAA
AAATCAAAATCCTGTACGCCACCTCTTGCTCTCCTTCTCGCCAGCGTGTCTCTGTTTGAC
TGGCCTGGTGGTGTTCTCCCATCCTGCCCTGGTGCTGTCGGAGACCACGGCACCTGCCAA
TAAAAGTGATGACAGACCTGGACCCTCACCCAGGTTTCCAACAATGGAGTTCACTTCATA
ATCACCAGAGTTCAGCCGGTAAGCCCG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               259-385, - strand, RNAz p=0.989479

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               259-385, - strand, RNAz p=0.989479

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               63-385, gnl|bosTau2|chr10 (37817014-37816694)
               

               
               63-385, gnl|canFam2|chr30 (28466943-28467420)
               

               
               63-385, gnl|echTel1|scaffold_312388 (33785-34239)
               

               
               63-385, gnl|hg17|chr15 (58731992-58732465)
               

               
               63-385, gnl|Hg17|chr15 (58732215-58732534)
               

               
               63-385, gnl|loxAfr1|scaffold_5243 (52402-51941)
               

               
               63-385, gnl|mm7|chr9 (69256372-69255914)
               

               
               63-385, gnl|Mm7|chr9 (69256162-69255843)
               

               
               63-385, gnl|monDom2|scaffold_12 (53936538-53936091)
               

               
               63-385, gnl|oryCun1|scaffold_209524 (142157-142606)
               

               
               63-385, gnl|panTro1|chr16 (59159708-59160181)
               

               
               63-385, gnl|rheMac2|chr7 (39073889-39074363)
               

               
               63-385, gnl|rn3|chr8 (73679942-73679485)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-385, gnl|bosTau2|chr10 (37817014-37816694)
               

               
               63-385, gnl|canFam2|chr30 (28466943-28467420)
               

               
               63-385, gnl|echTel1|scaffold_312388 (33785-34239)
               

               
               63-385, gnl|hg17|chr15 (58731992-58732465)
               

               
               63-385, gnl|Hg17|chr15 (58732215-58732534)
               

               
               63-385, gnl|loxAfr1|scaffold_5243 (52402-51941)
               

               
               63-385, gnl|mm7|chr9 (69256372-69255914)
               

               
               63-385, gnl|Mm7|chr9 (69256162-69255843)
               

               
               63-385, gnl|monDom2|scaffold_12 (53936538-53936091)
               

               
               63-385, gnl|oryCun1|scaffold_209524 (142157-142606)
               

               
               63-385, gnl|panTro1|chr16 (59159708-59160181)
               

               
               63-385, gnl|rheMac2|chr7 (39073889-39074363)
               

               
               63-385, gnl|rn3|chr8 (73679942-73679485)

	63-385, gnl\|bosTau2\|chr10 (37817014-37816694)
	63-385, gnl\|canFam2\|chr30 (28466943-28467420)
	63-385, gnl\|echTel1\|scaffold_312388 (33785-34239)
	63-385, gnl\|hg17\|chr15 (58731992-58732465)
	63-385, gnl\|Hg17\|chr15 (58732215-58732534)
	63-385, gnl\|loxAfr1\|scaffold_5243 (52402-51941)
	63-385, gnl\|mm7\|chr9 (69256372-69255914)
	63-385, gnl\|Mm7\|chr9 (69256162-69255843)
	63-385, gnl\|monDom2\|scaffold_12 (53936538-53936091)
	63-385, gnl\|oryCun1\|scaffold_209524 (142157-142606)
	63-385, gnl\|panTro1\|chr16 (59159708-59160181)
	63-385, gnl\|rheMac2\|chr7 (39073889-39074363)
	63-385, gnl\|rn3\|chr8 (73679942-73679485)