Non-Coding RNA Search

unkn-ESTPBL29

Sequence:


               
               GATCCAGTACCAACATGACTATTCACAAATTATTGATGTCCCTAAATCCCTGGCAGATTG
CAGACAGTTCTTGTATCCATTGAAGCCCAAGCATATGGCCACTAATGGGATGGATTAAAA
AAACACATATACACATTGCCTTTGCTACGCTAATATAAAGCCACTGAAATGCTAGAAGGT
GATTGAACTGGACGAAACACTGTTAAATACATGCTTAGCCTCATGTTATGGATCATTTCC
ATTGACATCTATCTGCGTCCTTGGTACAGTTTAATTAAAGCTGTCTGGAACAAGTCTGCC
CTCTAAATGATCGGCAGAACAGTGAAAAGGTGAAACACGAGGAGGCCTGAGGCTTTTTTT
GTAAAACACTCAAATGACTCTGTGGTTAAGGAGAGCAGCAGGGAAGAAATTCGTTTTCCA
AATTAGCTAGCCATTAGGCTTTTCTGTAAGAGAAGGCAAGGCTCCTTCTGATGCCGTCTT
GGAATACCAGAAGCTAAGGTGGTAGTACTGGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCCAGTACCAACATGACTATTCACAAATTATTGATGTCCCTAAATCCCTGGCAGATTG
CAGACAGTTCTTGTATCCATTGAAGCCCAAGCATATGGCCACTAATGGGATGGATTAAAA
AAACACATATACACATTGCCTTTGCTACGCTAATATAAAGCCACTGAAATGCTAGAAGGT
GATTGAACTGGACGAAACACTGTTAAATACATGCTTAGCCTCATGTTATGGATCATTTCC
ATTGACATCTATCTGCGTCCTTGGTACAGTTTAATTAAAGCTGTCTGGAACAAGTCTGCC
CTCTAAATGATCGGCAGAACAGTGAAAAGGTGAAACACGAGGAGGCCTGAGGCTTTTTTT
GTAAAACACTCAAATGACTCTGTGGTTAAGGAGAGCAGCAGGGAAGAAATTCGTTTTCCA
AATTAGCTAGCCATTAGGCTTTTCTGTAAGAGAAGGCAAGGCTCCTTCTGATGCCGTCTT
GGAATACCAGAAGCTAAGGTGGTAGTACTGGATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               204-318, - strand, RNAz p=0.790283

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               204-318, - strand, RNAz p=0.790283

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               4-514, gnl|bosTau2|chr10 (19380461-19380996)
               

               
               4-514, gnl|canFam2|chr30 (5759280-5760121)
               

               
               4-514, gnl|echTel1|scaffold_308761 (78926-78114)
               

               
               4-514, gnl|galGal2|chr5 (29030904-29029983)
               

               
               4-514, gnl|hg17|chr15 (33183882-33184727)
               

               
               4-514, gnl|Hg17|chr15 (33184169-33184689)
               

               
               4-514, gnl|loxAfr1|scaffold_105270 (845-10)
               

               
               4-514, gnl|mm7|chr2 (114017633-114018473)
               

               
               4-514, gnl|Mm7|chr2 (114017912-114018436)
               

               
               4-514, gnl|monDom2|scaffold_12 (9256963-9256093)
               

               
               4-514, gnl|oryCun1|scaffold_199329 (6693-7535)
               

               
               4-514, gnl|panTro1|chr16 (32965496-32966352)
               

               
               4-514, gnl|rheMac2|chr7 (13451662-13452519)
               

               
               4-514, gnl|rn3|chr3 (100050035-100050876)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-514, gnl|bosTau2|chr10 (19380461-19380996)
               

               
               4-514, gnl|canFam2|chr30 (5759280-5760121)
               

               
               4-514, gnl|echTel1|scaffold_308761 (78926-78114)
               

               
               4-514, gnl|galGal2|chr5 (29030904-29029983)
               

               
               4-514, gnl|hg17|chr15 (33183882-33184727)
               

               
               4-514, gnl|Hg17|chr15 (33184169-33184689)
               

               
               4-514, gnl|loxAfr1|scaffold_105270 (845-10)
               

               
               4-514, gnl|mm7|chr2 (114017633-114018473)
               

               
               4-514, gnl|Mm7|chr2 (114017912-114018436)
               

               
               4-514, gnl|monDom2|scaffold_12 (9256963-9256093)
               

               
               4-514, gnl|oryCun1|scaffold_199329 (6693-7535)
               

               
               4-514, gnl|panTro1|chr16 (32965496-32966352)
               

               
               4-514, gnl|rheMac2|chr7 (13451662-13452519)
               

               
               4-514, gnl|rn3|chr3 (100050035-100050876)

	4-514, gnl\|bosTau2\|chr10 (19380461-19380996)
	4-514, gnl\|canFam2\|chr30 (5759280-5760121)
	4-514, gnl\|echTel1\|scaffold_308761 (78926-78114)
	4-514, gnl\|galGal2\|chr5 (29030904-29029983)
	4-514, gnl\|hg17\|chr15 (33183882-33184727)
	4-514, gnl\|Hg17\|chr15 (33184169-33184689)
	4-514, gnl\|loxAfr1\|scaffold_105270 (845-10)
	4-514, gnl\|mm7\|chr2 (114017633-114018473)
	4-514, gnl\|Mm7\|chr2 (114017912-114018436)
	4-514, gnl\|monDom2\|scaffold_12 (9256963-9256093)
	4-514, gnl\|oryCun1\|scaffold_199329 (6693-7535)
	4-514, gnl\|panTro1\|chr16 (32965496-32966352)
	4-514, gnl\|rheMac2\|chr7 (13451662-13452519)
	4-514, gnl\|rn3\|chr3 (100050035-100050876)