Non-Coding RNA Search

unkn-LZV602768413.R1

Sequence:


               
               TTTTTTGGGTACCAAATTACTTTATTGAAGGAATGGTACACTAAGGAAAGAACTGAAGTA
GATGTTCTGGTAGGACTTATAGAAAAGGTGACGGTAACCCGAAACATGCATGCACTGCTT
TGGTGACCAGGGGGTCACCCCGTGTCTCCGGGAGGCCAGCTTAGGGCTTAGCTCTCACTG
CTCCCCAGGGTGTGCTTGTCAAAGAGATACTCGGCCATGCCATACTCGGGGGCCCCCATC
CTGTGCAAGTTGGTAATGTGGTCACCCAATTCTTTGATGGCTTTCACCTGCTCATCCAGG
TAATGCGTCTCAATGAAGTCACACAAGTGGGGGTCATTTTTGTCAGTGGCCAGTTTGTGC
AGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTGGGTACCAAATTACTTTATTGAAGGAATGGTACACTAAGGAAAGAACTGAAGTA
GATGTTCTGGTAGGACTTATAGAAAAGGTGACGGTAACCCGAAACATGCATGCACTGCTT
TGGTGACCAGGGGGTCACCCCGTGTCTCCGGGAGGCCAGCTTAGGGCTTAGCTCTCACTG
CTCCCCAGGGTGTGCTTGTCAAAGAGATACTCGGCCATGCCATACTCGGGGGCCCCCATC
CTGTGCAAGTTGGTAATGTGGTCACCCAATTCTTTGATGGCTTTCACCTGCTCATCCAGG
TAATGCGTCTCAATGAAGTCACACAAGTGGGGGTCATTTTTGTCAGTGGCCAGTTTGTGC
AGTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|89196|pir||S06279

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|89196|pir||S06279

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               224-318, - strand, RNAz p=0.975762

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               224-318, - strand, RNAz p=0.975762

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               7-364, gnl|bosTau2|chr12 (48464931-48464575)
               

               
               7-364, gnl|canFam2|chr11 (42065999-42066698)
               

               
               7-364, gnl|dasNov1|scaffold_47393 (39904-40518)
               

               
               7-364, gnl|echTel1|scaffold_197242 (2413-3082)
               

               
               7-364, gnl|Hg17|chr13 (22168001-22168364)
               

               
               7-364, gnl|hg17|chr4 (123051116-123051714)
               

               
               7-364, gnl|loxAfr1|scaffold_923 (112079-111443)
               

               
               7-364, gnl|Mm7|chr19 (9665217-9664773)
               

               
               7-364, gnl|mm7|chrX (86131699-86131045)
               

               
               7-364, gnl|monDom2|scaffold_20 (964275-963592)
               

               
               7-364, gnl|oryCun1|scaffold_200015 (3143-3829)
               

               
               7-364, gnl|panTro1|chr3 (139885709-139886307)
               

               
               7-364, gnl|rheMac2|chr5 (114138278-114138883)
               

               
               7-364, gnl|rn3|chr1 (24188888-24189575)
               


               
               199-336, gnl|bosTau2|chr10 (49577014-49576877)
               

               
               199-336, gnl|Hg17|chr7 (45810390-45810558)
               

               
               199-336, gnl|Mm7|chr4 (124949475-124949300)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-364, gnl|bosTau2|chr12 (48464931-48464575)
               

               
               7-364, gnl|canFam2|chr11 (42065999-42066698)
               

               
               7-364, gnl|dasNov1|scaffold_47393 (39904-40518)
               

               
               7-364, gnl|echTel1|scaffold_197242 (2413-3082)
               

               
               7-364, gnl|Hg17|chr13 (22168001-22168364)
               

               
               7-364, gnl|hg17|chr4 (123051116-123051714)
               

               
               7-364, gnl|loxAfr1|scaffold_923 (112079-111443)
               

               
               7-364, gnl|Mm7|chr19 (9665217-9664773)
               

               
               7-364, gnl|mm7|chrX (86131699-86131045)
               

               
               7-364, gnl|monDom2|scaffold_20 (964275-963592)
               

               
               7-364, gnl|oryCun1|scaffold_200015 (3143-3829)
               

               
               7-364, gnl|panTro1|chr3 (139885709-139886307)
               

               
               7-364, gnl|rheMac2|chr5 (114138278-114138883)
               

               
               7-364, gnl|rn3|chr1 (24188888-24189575)
               


               
               199-336, gnl|bosTau2|chr10 (49577014-49576877)
               

               
               199-336, gnl|Hg17|chr7 (45810390-45810558)
               

               
               199-336, gnl|Mm7|chr4 (124949475-124949300)

	7-364, gnl\|bosTau2\|chr12 (48464931-48464575)
	7-364, gnl\|canFam2\|chr11 (42065999-42066698)
	7-364, gnl\|dasNov1\|scaffold_47393 (39904-40518)
	7-364, gnl\|echTel1\|scaffold_197242 (2413-3082)
	7-364, gnl\|Hg17\|chr13 (22168001-22168364)
	7-364, gnl\|hg17\|chr4 (123051116-123051714)
	7-364, gnl\|loxAfr1\|scaffold_923 (112079-111443)
	7-364, gnl\|Mm7\|chr19 (9665217-9664773)
	7-364, gnl\|mm7\|chrX (86131699-86131045)
	7-364, gnl\|monDom2\|scaffold_20 (964275-963592)
	7-364, gnl\|oryCun1\|scaffold_200015 (3143-3829)
	7-364, gnl\|panTro1\|chr3 (139885709-139886307)
	7-364, gnl\|rheMac2\|chr5 (114138278-114138883)
	7-364, gnl\|rn3\|chr1 (24188888-24189575)

	199-336, gnl\|bosTau2\|chr10 (49577014-49576877)
	199-336, gnl\|Hg17\|chr7 (45810390-45810558)
	199-336, gnl\|Mm7\|chr4 (124949475-124949300)