Non-Coding RNA Search

unkn-MI-P-AY0-nes-h-06-0-UI.s1

Sequence:


               
               TTTTTTTTTTTTTTTTTCCCTAAGGGGGAGTTTATTTCCCGGTCAAAAAAGGAAAAGCAG
GGACAGGCCCCTGTGCATTCTAGGCCAGGGGCCTGACCAAGGAGGGGGTGTGGGGGCGGC
AAAGGGGACGGCCCCAGCTGTGCAAGCTTGGCCCCACAGTTGTCCTGGCTGGGTCCAGAA
AGGGCCTGGTTGGGGATGGGGGAACCAACCCTGGGGGCAAGGGGGCAGGCAAATGGGCCC
AAAGGACGGCACTTATGGTGGCAAGAAATATTGACAGGCCAGGCAGGCAACCCCAGGCCG
GCAGGCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTCCCTAAGGGGGAGTTTATTTCCCGGTCAAAAAAGGAAAAGCAG
GGACAGGCCCCTGTGCATTCTAGGCCAGGGGCCTGACCAAGGAGGGGGTGTGGGGGCGGC
AAAGGGGACGGCCCCAGCTGTGCAAGCTTGGCCCCACAGTTGTCCTGGCTGGGTCCAGAA
AGGGCCTGGTTGGGGATGGGGGAACCAACCCTGGGGGCAAGGGGGCAGGCAAATGGGCCC
AAAGGACGGCACTTATGGTGGCAAGAAATATTGACAGGCCAGGCAGGCAACCCCAGGCCG
GCAGGCCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               123-213, - strand, RNAz p=0.751627

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               123-213, - strand, RNAz p=0.751627

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               164-227, + strand, RNAmicro p=0.904768

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               164-227, + strand, RNAmicro p=0.904768

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004309, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004309, -

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               17-307, gnl|bosTau2|chr19 (45384993-45385289)
               

               
               17-307, gnl|canFam2|chr9 (3423454-3423029)
               

               
               17-307, gnl|canFam2|chr9 (3423454-3423029)
               

               
               17-307, gnl|echTel1|scaffold_89939 (1127-1474)
               

               
               17-307, gnl|echTel1|scaffold_89939 (1127-1474)
               

               
               17-307, gnl|hg17|chr17 (77418885-77419296)
               

               
               17-307, gnl|Hg17|chr17 (77418886-77419175)
               

               
               17-307, gnl|hg17|chr17_random (1924759-1925171)
               

               
               17-307, gnl|loxAfr1|scaffold_118562 (1257-1685)
               

               
               17-307, gnl|loxAfr1|scaffold_118562 (1257-1685)
               

               
               17-307, gnl|mm7|chr11 (120687156-120687584)
               

               
               17-307, gnl|mm7|chr11 (120687156-120687584)
               

               
               17-307, gnl|Mm7|chr11 (120687157-120687446)
               

               
               17-307, gnl|monDom2|scaffold_18 (14752344-14752878)
               

               
               17-307, gnl|monDom2|scaffold_18 (14752344-14752878)
               

               
               17-307, gnl|panTro1|chr19 (81179347-81179756)
               

               
               17-307, gnl|panTro1|chr19 (81179347-81179756)
               

               
               17-307, gnl|rheMac2|chr16 (77292310-77292722)
               

               
               17-307, gnl|rheMac2|chr16 (77292310-77292722)
               

               
               17-307, gnl|rn3|chr10 (109982277-109982705)
               

               
               17-307, gnl|rn3|chr10 (109982277-109982705)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-307, gnl|bosTau2|chr19 (45384993-45385289)
               

               
               17-307, gnl|canFam2|chr9 (3423454-3423029)
               

               
               17-307, gnl|canFam2|chr9 (3423454-3423029)
               

               
               17-307, gnl|echTel1|scaffold_89939 (1127-1474)
               

               
               17-307, gnl|echTel1|scaffold_89939 (1127-1474)
               

               
               17-307, gnl|hg17|chr17 (77418885-77419296)
               

               
               17-307, gnl|Hg17|chr17 (77418886-77419175)
               

               
               17-307, gnl|hg17|chr17_random (1924759-1925171)
               

               
               17-307, gnl|loxAfr1|scaffold_118562 (1257-1685)
               

               
               17-307, gnl|loxAfr1|scaffold_118562 (1257-1685)
               

               
               17-307, gnl|mm7|chr11 (120687156-120687584)
               

               
               17-307, gnl|mm7|chr11 (120687156-120687584)
               

               
               17-307, gnl|Mm7|chr11 (120687157-120687446)
               

               
               17-307, gnl|monDom2|scaffold_18 (14752344-14752878)
               

               
               17-307, gnl|monDom2|scaffold_18 (14752344-14752878)
               

               
               17-307, gnl|panTro1|chr19 (81179347-81179756)
               

               
               17-307, gnl|panTro1|chr19 (81179347-81179756)
               

               
               17-307, gnl|rheMac2|chr16 (77292310-77292722)
               

               
               17-307, gnl|rheMac2|chr16 (77292310-77292722)
               

               
               17-307, gnl|rn3|chr10 (109982277-109982705)
               

               
               17-307, gnl|rn3|chr10 (109982277-109982705)

	17-307, gnl\|bosTau2\|chr19 (45384993-45385289)
	17-307, gnl\|canFam2\|chr9 (3423454-3423029)
	17-307, gnl\|canFam2\|chr9 (3423454-3423029)
	17-307, gnl\|echTel1\|scaffold_89939 (1127-1474)
	17-307, gnl\|echTel1\|scaffold_89939 (1127-1474)
	17-307, gnl\|hg17\|chr17 (77418885-77419296)
	17-307, gnl\|Hg17\|chr17 (77418886-77419175)
	17-307, gnl\|hg17\|chr17_random (1924759-1925171)
	17-307, gnl\|loxAfr1\|scaffold_118562 (1257-1685)
	17-307, gnl\|loxAfr1\|scaffold_118562 (1257-1685)
	17-307, gnl\|mm7\|chr11 (120687156-120687584)
	17-307, gnl\|mm7\|chr11 (120687156-120687584)
	17-307, gnl\|Mm7\|chr11 (120687157-120687446)
	17-307, gnl\|monDom2\|scaffold_18 (14752344-14752878)
	17-307, gnl\|monDom2\|scaffold_18 (14752344-14752878)
	17-307, gnl\|panTro1\|chr19 (81179347-81179756)
	17-307, gnl\|panTro1\|chr19 (81179347-81179756)
	17-307, gnl\|rheMac2\|chr16 (77292310-77292722)
	17-307, gnl\|rheMac2\|chr16 (77292310-77292722)
	17-307, gnl\|rn3\|chr10 (109982277-109982705)
	17-307, gnl\|rn3\|chr10 (109982277-109982705)